RetrogeneDB ID:
retro_mputfur_398
Organism:
Location:
GL896907.1:10882025-10882493 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
53.66 %
Coverage:
100.0 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
RPL21
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L21 [Source:HGNC Symbol;Acc:10313]

Genomic region (view in browser)





>retro_mputfur_398
ATGATCAACGCAAAGGGGAAGAGGTGAGGCGCCGCTCAGTGTTCTCCGGGCCTTTGAGAA
GACCTGGAATTGTTCCTTCAACACAAACTTGTGAAACAGCAAGAAAGGTGATGTTGCAGA
CATCAAGGGAATGGACACTGTTCAAAAGGAATGGCCCCACCCATGTTACCCTGGCAAAGC
GGGAAGGGTCCGCCAGGTTGCCCAGCGTGCTGCTGGCATTGTAGTAAACACACTAAGGGC
AAGATTTCTGCCAAGAGAATGGATGTCTATATTGAGCATCTTAAGTGCTCTAAGAGCCGA
GATAGCTCCCTGAAACGTGGGAAGGAAAATTATCAGAAAAAAAGAAGGAAGCCAAAGAGC
AAGGTGCCCGGGCTTGACTCAAGGGCCAGCTTGCCCACCAGGGAAGCACGCTTTGTGAGA
AAGGAGCCTGGGCTGCGGCTGAGACCCATTCGCTATGAATTCATGGCT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MTNTKGKRRGT-RYMFSRP-FRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKIL-AKRINVRIEHIK
M.N.KGKR.G..R..FS.P.F.K.......T.....KKGD..DIKGM.TVQK..PH.CY.GK.GRV..V.Q.A.GIVVN.......L.AKR..V.IEH.K
Retrocopy
MINAKGKR*GA/RSVFSGP/FEKTWNCSFNTNL*NSKKGDVADIKGMDTVQKEWPHPCYPGKAGRVRQVAQRAAGIVVN-TLRARFL/AKRMDVYIEHLK


Parental protein
HSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPEL-LEPIPYEFMA
.SKSRDS.LKR.KEN.QKK.............R...P.REA.FVR...KEP.L.L.PI.YEFMA
Retrocopy
CSKSRDSSLKRGKENYQKKRRKPKSKVPGLDSRASLPTREARFVR---KEPGLRLRPIRYEFMA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide