RetrogeneDB ID:
retro_mputfur_401
Organism:
Location:
GL896907.1:18341981-18342557 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.37 %
Coverage:
67.01 %
Frameshifts:
3
Stop codons:
7


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_401
GTTGGTGGTGATAAGCCTGGTGGCTCAGGAGTGGTTAAACTTCGCAGAATGCCTAGATGT
TACTCTTGTGAAAATATTCCTTGAAAGCTGTTGAGCTGAGGCAAAAATCCCCTCAGTTAG
CCTGTTAGAAAACTTTGATCTAGTTCCACTCTCAACAGCATTCTCAGCATCCTCTGTGGG
CACCACAGAGGTAAGTGGATGGTTTCCTGAAGCAACTGAGCAGTGGCTTGCTTTTGTGAC
TGCACCTCTGACACTCATTTGAGTTTCTCTCTGCAGAACATACCAGAAATTTGTTATTGC
CACCTCCACCAAAATTGATATCAATAGTGTGAAAATCCTTGAACATCTCACTGATCTTAC
TTTAGGAAGAAGAAGCATTGAAAGCCCAGACACCAGGAAGATGAGATGTTTGACACAGAG
AAAGAGAAATACCAGCATACAGAGCAGCATAAGATTAAGGAGAAAGCTGTGGACTCACAA
ATTCTGCAAAAAAGAAAAGCTATTCCTCAACTGCAGGGCTAAATCCACTCTGTGTTTTCT
CTCACAAGTGGAGTTGATCCTCAGAAACTGATGTTT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVV-FLKQLSSGLLL-VTGPLSLNRVPLRRTHQKF
VGGDK.GG..VVKLR.MPR.Y..E..P.KLLS.GK.P.S..VRKL..S.T...IL.IL.G.HRGK..V.FLKQLSSGLLL.VT.PL.L..V.L.RT.QKF
Retrocopy
VGGDKPGGSGVVKLRRMPRCYSCENIP*KLLS*GKNPLS*PVRKL*SSSTLNSILSILCGHHRGKWMV/FLKQLSSGLLL/VTAPLTLI*VSLCRTYQKF


Parental protein
VIATSTKIDISNVKIPKHLTD-AYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKVDQKAVDSQILPKIKAVPQLQGYLRSVFSLTNGVYPHKLVF
VIATSTKIDI..VKI..HLTD..YF.KKK..KPRHQE.E.FDTEKEKY..TEQ.K...KAVDSQIL.K.KA.PQLQG...SVFSLT.GV.P.KL.F
Retrocopy
VIATSTKIDINSVKILEHLTD/SYFRKKKH*KPRHQEDEMFDTEKEKYQHTEQHKIKEKAVDSQILQKRKAIPQLQG*IHSVFSLTSGVDPQKLMF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide