RetrogeneDB ID:
retro_mputfur_402
Organism:
Location:
GL896907.1:21038942-21039866 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
96.75 %
Coverage:
88.25 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
ST13
Parental gene aliases:
No gene alias available
Parental gene description:
suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) [Source:HGNC Symbol;Acc:11343]

Genomic region (view in browser)





>retro_mputfur_402
AGTACCCGCGCCTGGAATCGGGTCGCAACCCCAGCCGCGCCTGCCGCCTGCCACTGCCTC
TGGACCATGGACCCCCGCAAAGTGAGCGAGCTTCGGGCTTTCCTGAAAATGTGTAAGCAG
GATCCGAGCGTTCTGCACACCGAGGAAATGCGTTTCCTGCGGGAGTGGATGGAGAGCATG
GGGGGTAAAATACCACCTGCCACTCATAAAACTAAAACAGAAGATAGTATCAAGGAAGAA
AAACCAGATAGTAAGAAGGCGGAGGAAAACATAAAGACAGATGAACCATCAAGTGAGGAG
AGTGATCTAGAAATTGACAATGAAGGTGTTATTGAACCAGATACCAATGCCCCTCAAGAA
ATGGGAGATGAAAATGCAGAGATAACCGAGGAAATGATGGATCAGGCAAATGATAAAAAA
CTGGCTGCCATTGATGCCCTAAATGATGGTGAACTACAGAAAGCCATTGACTTGTTCACA
GATGCCAACAAACTAAATCCTCGCTTGGCCATTCTGTATGCCAAGAGAGCCAGTGTCTTC
ATCAAATTACAGAAGCCAAATGCTGCCATTCGAGACTGTGACAGAGCTATTGAAATAAAT
CCTGATTCAGCTCAGCCTTATAAGTGGCGTGGGAAAGCACATAGACTTCTGGGCCATTGG
GAAGAAGCAGCACATGATCTTGCCCTTGCTTGCAAGCTCGATTATGATGAAGATGCTAGT
GCGATGCTGAAAGAAATTCAACCGAGGGCCCAGAAAATTGCTGAACATCGTAGAAAATAC
GAGCGAAAACATGAAGAGCGAGAGATCAAAGAAAGAATAGAAAGGGTTAAGAAGGCTCGG
GAAGAACACGAGAGAGCCCAGAGGGAGGAAGAAGCCAGGCGACAATCAGGAGCTCAGGAT
GGCTCTTTCCCAGGTGGCTTTCCT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
STRAWNRVATPAALAACHCLWTMDPRKVSELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKIPPATHKTKSEDSIKEEKPDSKKAEENIKTDEPSSEE
STRAWNRVATPAA.AACHCLWTMDPRKVSELRAF.KMCKQDPSVLHTEEMRFLREW.ESMGGKIPPATHKTK.EDSIKEEKPDSKKAEENIKTDEPSSEE
Retrocopy
STRAWNRVATPAAPAACHCLWTMDPRKVSELRAFLKMCKQDPSVLHTEEMRFLREWMESMGGKIPPATHKTKTEDSIKEEKPDSKKAEENIKTDEPSSEE


Parental protein
SDLEIDNEGVIEPDTDAPQEMGDENAEITEEMMDQANDKKVAAIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEIN
SDLEIDNEGVIEPDT.APQEMGDENAEITEEMMDQANDKK.AAIDALNDGELQKAIDLFTDA.KLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEIN
Retrocopy
SDLEIDNEGVIEPDTNAPQEMGDENAEITEEMMDQANDKKLAAIDALNDGELQKAIDLFTDANKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEIN


Parental protein
PDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQPRAQKIAEHRRKYERKREEREIKERIERVKKAREEHERAQREEEARRQSGAQY
PDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKE.QPRAQKIAEHRRKYERK.EEREIKERIERVKKAREEHERAQREEEARRQSGAQ.
Retrocopy
PDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEIQPRAQKIAEHRRKYERKHEEREIKERIERVKKAREEHERAQREEEARRQSGAQD


Parental protein
GSFPGGFP
GSFPGGFP
Retrocopy
GSFPGGFP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide