RetrogeneDB ID:
retro_mputfur_403
Organism:
Location:
GL896907.1:24037874-24038234 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
81.67 %
Coverage:
57.77 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
BTF3
Parental gene aliases:
No gene alias available
Parental gene description:
basic transcription factor 3 [Source:HGNC Symbol;Acc:1125]

Genomic region (view in browser)





>retro_mputfur_403
CTTCAGTTCTCCCTAAAGAAGTCAGGGATAAATAATATCTCTGGTATTGAAGAAGTGAAT
ATGTTCACAAACCAAGGAACAGTGATCCATTCTGACAACCCCACAGTTCAGATATCGCTG
GCAGAGAACACTTTCTCCATCATAGACCACGCTGAGACAAAGCCGCTGACAGACATGCTT
CCCAGTATCTTAAACCAAGTTGGTGCAGACAGTCTGACTAGCTGAAGAAGACTGGCTGAA
GCTCTGCCTACACAGTCTGTGGGAGGAAAAGCCCCATTTGGTACCAGAGAGGATAATGAT
GATGATGAAGTTCCACATTTTGTGGAGAATTTTGATGAAGCTTCCAAGAATGAGGCAAAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGED-D
LQFSLKK.G.NNISGIEEVNMFTNQGTVIH..NP.VQ.SLA.NTF.I..HAETK.LT.MLPSILNQ.GADSLTS.RRLAEALP.QSV.GKAP..T.ED.D
Retrocopy
LQFSLKKSGINNISGIEEVNMFTNQGTVIHSDNPTVQISLAENTFSIIDHAETKPLTDMLPSILNQVGADSLTS*RRLAEALPTQSVGGKAPFGTREDND


Parental protein
DDEVPDLVENFDEASKNEAN
DDEVP..VENFDEASKNEAN
Retrocopy
DDEVPHFVENFDEASKNEAN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide