RetrogeneDB ID:
retro_mputfur_404
Organism:
Location:
GL896907.1:4784061-4784466 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
65.0 %
Coverage:
90.73 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
CALM3
Parental gene aliases:
No gene alias available
Parental gene description:
calmodulin 3 (phosphorylase kinase, delta) [Source:HGNC Symbol;Acc:1449]

Genomic region (view in browser)





>retro_mputfur_404
ATGGCTGATCAGCTGACTGAAGCATAGACTGCTGAATTCAGGGAGGCTTTTCCGTACTTG
ACAAAGATGGCCATGGTGCCATCACAACAAAGGAACTTGGAGCTGTCATGGCGTCACTGG
GTCAGAACCCAACAGAAGCCAAATTGCAAGATATAATCAAAGAGGTAGATGCCGACGGTA
ATGGCACCATGGACTTCCCAGAATTTCTGACTATGATTGCTAGAAAAATGAAAGCCACAG
TGAAGAAGAAATTCGGGAGGCATTTCGACTCTTTGACGAGGATGGCACTGGGGACATCAG
TGCGGCAGAGCTCCATCATCCACAACCAGCTTAAGAGAAAAACAGATGAAGAAGGAGATG
AAATGATCAGAGAAGCATGTATCGATGGAGAGGACCAGTCAGGTA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MADQLTEEQIAEFKEAF-SLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDT-DSEEEIREAFRVFDKDGN
MADQLTE...AEF.EAF.S..DKDG.G.ITTKELG.VM.SLGQNPTEA.LQD.I.EVDADGNGT.DFPEFLTM.ARKMK.T...EE.IREAFR.FD.DG.
Retrocopy
MADQLTEA*TAEFREAF/SVLDKDGHGAITTKELGAVMASLGQNPTEAKLQDIIKEVDADGNGTMDFPEFLTMIARKMKAT/SEEE-IREAFRLFDEDGT


Parental protein
GYISAAELRHVM-TNLGEKLTDEEVDEMIREADIDGDGQV
G.ISAAEL.H...T.L.EK....E..............QV
Retrocopy
GDISAAELHHPQ/TSLREKQMKKEMK*SEKHVSMERTSQV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide