RetrogeneDB ID:
retro_mputfur_411
Organism:
Location:
GL896907.1:26575790-26577041 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
83.45 %
Coverage:
99.52 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_411
GCTGGCCCATTGATATCTATGTACTCCAAAAAGGGAGAATCATCTAGCAAAAATGTTACT
TTGCCTGCTGTGTTCAAGGCTCCCATTCGACCTGATATAGTGAACTTTGTTCACACCAAC
TTGCACAAAAACAACAGACAGGCATATGCTGTCAGTGAATTAGCAACTTATCAAACCAGT
GCTAAGTCTTGGGATACTGGCAGAGCTGTAGGTCTATTCCCAGAGTTCGAGGTGGTGGGA
CTCACCGTTCTGGCCAGGGTGCTTTTGGAAATATGCGTCGTGGGGGCACATGTTTGCACC
CACCAAAACCTGGCACCATTGGCATCACAGAGTGAACATAATACAGAAGTGATATGCCAT
CTGCTCTGCCCTGGCTGCCTCAGTCTTCCCAGTGCTAGTTATGTCTAAAGGTCATTGTAT
TGAGGAAGTTCCTGAACTTCCTTTGGTGATTGAAGATAAAGTTGAAGGCTACAAGAAGAC
CAAGGAGGCTGTTTTGCTACTTAAGAAACTTAAAGCCTGGGATGATATCAGAAAGGTCTA
TGCCTTTCAGCAAATGAGAGCTGGCAAGGGAAAAATGAGAAACCATCATCATATCCAGTG
CAGGGGACCCTGCGTCATCTACAATGAAGACAATGGTATCATCAAGGCCTTCAGAAACAA
CTTGGAATTACTTTACTTGATGTAAGCAAACTGAACATTTTGAAACTTGCTCCTGGTGGG
CATGTGGGATGTTTCTGCATTTGGACTGAAAGTGCTTTCCACAAGTTAGACAATCTGTAT
GGCACTTGGCATGAGGCTGCCTCCCTCGAGAGTAACTACAACCTTCCCATGCATAAGATG
CTTAATACAGACCTTAGCAGAATCTTGAAAAATCCAGAGATCCAAAAATCCCTCTGAGCA
CCACGCAAGAAGATTCATCGTTGGGTCCTGAAGAAGAATCCACAGAAGAACCTGAGAATC
ATGTTGAAGATAAACCCATATGTGAAGACCATGTGCCGGAATACCATTCTTCATCAGGCC
AAGAATCACAAACTTTGGATGGATAAAGTGGTAGCAGCTTTGGAAGCCAAATCAGGTGAG
AAGGGGGTTCCAGGCAAGAAGCCTTCCCTTCCAGGGAAGAAAGGAAAGAAGGCTGCTGGT
GTGAAGAAGCAGAAGAAACCTATAGTGGGGAAAAAGGCTGCAGCTATTAGGAAACCAGCA
GCTGACAAGAAGCCTGCAGAAAAGAAACCCACTGCAGAGAAGCCTGCTGCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVA-RIPRVRGGGTHRSGQGAFGNMCRGG-RM
A.PLIS.YS.KGESS.KNVTLPAVFKAPIRPDIVNFVHTNL.KNNRQ.YAVSELA..QTSA.SW.TGRAV...IPRVRGGGTHRSGQGAFGNM.RGG..M
Retrocopy
AGPLISMYSKKGESSSKNVTLPAVFKAPIRPDIVNFVHTNLHKNNRQAYAVSELATYQTSAKSWDTGRAVG/SIPRVRGGGTHRSGQGAFGNMRRGG/HM


Parental protein
FAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRR
FAPTKTW..WH.RVN..QK.YAICSALAAS..P.LVMSKGH.IEEVPELPLV.EDKVEGYKKTKEAVLLLKKLKAW.DI.KVYA.Q.MRAGKGKMRN...
Retrocopy
FAPTKTWHHWHHRVNIIQK*YAICSALAASVFPVLVMSKGHCIEEVPELPLVIEDKVEGYKKTKEAVLLLKKLKAWDDIRKVYAFQQMRAGKGKMRNHHH


Parental protein
IQRRGPCIIYNEDNGIIKAF-RNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDDLYGTWRKAASLKSNYNLPMHKMLNTDLSRILKSPEIQR
IQ.RGPC.IYNEDNGIIKAF.....GITLL.VSKLNILKLAPGGHVG.FCIWTESAF.KLD.LYGTW..AASL.SNYNLPMHKMLNTDLSRILK.PEIQ.
Retrocopy
IQCRGPCVIYNEDNGIIKAF/QKQLGITLLDVSKLNILKLAPGGHVGCFCIWTESAFHKLDNLYGTWHEAASLESNYNLPMHKMLNTDLSRILKNPEIQK


Parental protein
ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAKNHKLRMDKAAAALEAKSGEKGVPGKKP-LVGKKGKKAVSVKKQKKPVVGKKAAAT
.L.APRKKIHR.VLKKNP.KNLRIMLK.NPY.KTM.RNTIL.QAKNHKL.MDK..AALEAKSGEKGVPGKKP.L.GKKGKKA..VKKQKKP.VGKKAAA.
Retrocopy
SL*APRKKIHRWVLKKNPQKNLRIMLKINPYVKTMCRNTILHQAKNHKLWMDKVVAALEAKSGEKGVPGKKPSLPGKKGKKAAGVKKQKKPIVGKKAAAI


Parental protein
KKPAADKKPAEKKPTAEGKKPAA
.KPAADKKPAEKKPTAE..KPAA
Retrocopy
RKPAADKKPAEKKPTAE--KPAA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide