RetrogeneDB ID:
retro_mputfur_414
Organism:
Location:
GL896908.1:5839364-5839775 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
89.78 %
Coverage:
53.73 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
PSMA3
Parental gene aliases:
No gene alias available
Parental gene description:
proteasome (prosome, macropain) subunit, alpha type, 3 [Source:HGNC Symbol;Acc:9532]

Genomic region (view in browser)





>retro_mputfur_414
TATTCTGCTGCGTATACACTCTACAGTGCTGTTTGACCTTTTGGCTGCAGTTTCATGTTA
GGATCTTACAGTGTGAATGATGGTGCACAGCTCTACATGATTGGCCCATTAGGAGTTTCA
CATGGTTATTGGGGTTGTGCCATTGGCAAAGCCAGGCAAGCTGCAAAGACAGAAATAGAA
AAACTTCAGATGAAAGAAATGACCTGCAGTGATATTGTTAAAGAAGTTGCAAAAATAATT
TACATAGTACATGATGAAGTTAAGGATAAAGCTTTTGAACTAGATCTCAGCTGGGTTGGT
GAAATATCTAAAAGAAGACATGAAATTGTTCCAAAAGATATAAAGGAAGAGGCAGAGAAA
TATGCTAAGGAACCATTGAAGGAATAAGATGAATCAGATGATGATATTATG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
YVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDEVKDKAFELELSWVG
Y..AYTLYSAV.PFGCSFMLGSYSVNDGAQLYMI.P.GVS.GYWGCAIGKARQAAKTEIEKLQMKEMTC.D.VKEVAKIIYIVHDEVKDKAFEL.LSWVG
Retrocopy
YSAAYTLYSAV*PFGCSFMLGSYSVNDGAQLYMIGPLGVSHGYWGCAIGKARQAAKTEIEKLQMKEMTCSDIVKEVAKIIYIVHDEVKDKAFELDLSWVG


Parental protein
EITKGRHEIVPKDIKEEAEKYAKESLKEEDESDDDNM
EI.K.RHEIVPKDIKEEAEKYAKE.LKE.DESDDD.M
Retrocopy
EISKRRHEIVPKDIKEEAEKYAKEPLKE*DESDDDIM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide