RetrogeneDB ID:
retro_mputfur_419
Organism:
Location:
GL896908.1:1193115-1194479 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
92.32 %
Coverage:
95.99 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
CORO1C
Parental gene aliases:
No gene alias available
Parental gene description:
coronin, actin binding protein, 1C [Source:HGNC Symbol;Acc:2254]

Genomic region (view in browser)





>retro_mputfur_419
ATGAGGCGAGTGATAAGACAGAGCAAGTTTCGGCCTGTATTTGGACAAGCGGTAAAAAAC
AACCTGTGTTATGATGACATCCAGGTTTCTCGAGTGACCTGGGATAGTTCCTTTTGCACT
GTCAATCCCAGATTTGTTGCCATTATCATAGAAGCGAGTGGGGGAGGAGCGTTCCTTGTG
CTCCCTTTGCACAAGACTGGTCGAATCGACAAATCCTACCCTACATTATGTGGCCACACA
GGACTGGTGCTCAACATAGACTGGTGCCCACATAACGATCAGGTCATTGCCAATGACTCA
GAAGACTGCACGGTGATGGTGTGGCAGATCCCAGAAAATGGACTTATCCTTTCCCTGACC
GGACCTGTGGTGATTTTAGAAGACCACTGGAAGAGAGTTGGCATCGTGGCCTGGCATCCG
ACTGCCCACAATGTCCTTCTTAGTGCAGACTGTGATAATGCCATCATCATCTGGAATGTG
GGGACAGGGGAAGTCCTTATAAACTTGGATGATATGCATTCAGATATGATTTACAACATG
AGCTGGGACCGGAATGGCGGTCTGATCTGCACAGCTTCCAAAGACAAGAAAGTGAGAGTA
ATCGATCCTAGGAGACAAGAGATCGTTGCTGAGAAGGAGAAAGCACATGAAGGAGCAAGA
CCCATGAGAGCCATCTTTCTGGCAGACGGGAATGTCTTCACCACTGGTTTCAGCCGCATG
AGTGAGCGGCAGCTGGCTCTCTGGAATCTGAAAAATATGCAGGAACCAATTGCTCTTCAA
GAAATGGACACTAGCAATGGGGTATTGCTGCCCTTCTATGACCCCGACACCAGTATCATT
TACTTATGTGGAACCGGTGACGACAGTATCCGCTATTTTGAGATCACAGATGAATCCCTG
TATGTCCACTACCTCAACACATTCAGCAGCAAGGAGCCTCAGAGAGGGATGGGCTACATG
CCCAAGAGGGGACTCGATGTTAACAAATGTGAGATTGCCAGATTCTTCAAACTCATGAGT
GGAAGTGTGAGCCTATTATCATGACTATTCCCAGGAAGTCTGACCTTTTCCAAGATGACC
TGTATCCTGACACAGCAGGGCCTGAAGCAGCACTGGAGGCAGAGGAGTGGTTGGAGGGGA
GAAATGCAGATCCAGTCCTCATCTCCTTAAAGCATGGATACATTCCTGGCAAAAACCGGG
ATCTCAAGGTGGTCAAGAAGAACATTCTGGATAGCAAGCCCACTGCAAATAAGAAGTGCG
ACCTGATCAGTGTCCCCAAGAAAACCCCAGACACGGCTAGTGTGCAAAACGAAGCCAAGC
TGGATGAGATTTTAAAAGAGATCAAATCTATAAAAGACACAGTA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MRRVVRQSKFRHVFGQAVKNDQCYDDIRVSRVTWDSSFCAVNPRFVAIIIEASGGGAFLVLPLHKTGRIDKSYPTVCGHTGPVLDIDWCPHNDQVIASGS
MRRV.RQSKFR.VFGQAVKN..CYDDI.VSRVTWDSSFC.VNPRFVAIIIEASGGGAFLVLPLHKTGRIDKSYPT.CGHTG.VL.IDWCPHNDQVIA..S
Retrocopy
MRRVIRQSKFRPVFGQAVKNNLCYDDIQVSRVTWDSSFCTVNPRFVAIIIEASGGGAFLVLPLHKTGRIDKSYPTLCGHTGLVLNIDWCPHNDQVIANDS


Parental protein
EDCTVMVWQIPENGLTLSLTEPVVILEGHSKRVGIVAWHPTARNVLLSAGCDNAIIIWNVGTGEALINLDDMHSDMIYNVSWNRNGSLICTASKDKKVRV
EDCTVMVWQIPENGL.LSLT.PVVILE.H.KRVGIVAWHPTA.NVLLSA.CDNAIIIWNVGTGE.LINLDDMHSDMIYN.SW.RNG.LICTASKDKKVRV
Retrocopy
EDCTVMVWQIPENGLILSLTGPVVILEDHWKRVGIVAWHPTAHNVLLSADCDNAIIIWNVGTGEVLINLDDMHSDMIYNMSWDRNGGLICTASKDKKVRV


Parental protein
IDPRKQEIIAEKEKAHEGARPMRAIFLADGNVFTTGFSRMSERQLALWNPKNMQEPIALHEMDTSNGVLLPFYDPDTSIIYLCGKGDSSIRYFEITDESP
IDPR.QEI.AEKEKAHEGARPMRAIFLADGNVFTTGFSRMSERQLALWN.KNMQEPIAL.EMDTSNGVLLPFYDPDTSIIYLCG.GD.SIRYFEITDES.
Retrocopy
IDPRRQEIVAEKEKAHEGARPMRAIFLADGNVFTTGFSRMSERQLALWNLKNMQEPIALQEMDTSNGVLLPFYDPDTSIIYLCGTGDDSIRYFEITDESL


Parental protein
YVHYLNTFSSKEPQRGMGYMPKRGLDVNKCEIARFFKL-HERKCEPIIMTVPRKSDLFQDDLYPDTAGPEAALEAEEWFEGKNADPVLISLKHGYIPGKN
YVHYLNTFSSKEPQRGMGYMPKRGLDVNKCEIARFFKL.HE.KCEPIIMT.PRKSDLFQDDLYPDTAGPEAALEAEEW.EG.NADPVLISLKHGYIPGKN
Retrocopy
YVHYLNTFSSKEPQRGMGYMPKRGLDVNKCEIARFFKL/HEWKCEPIIMTIPRKSDLFQDDLYPDTAGPEAALEAEEWLEGRNADPVLISLKHGYIPGKN


Parental protein
RDLKVVKKNILDSKPTANKKCDLISVAKKTPDTASVQNEAKLDEILKEIKSIKDTI
RDLKVVKKNILDSKPTANKKCDLISV.KKTPDTASVQNEAKLDEILKEIKSIKDT.
Retrocopy
RDLKVVKKNILDSKPTANKKCDLISVPKKTPDTASVQNEAKLDEILKEIKSIKDTV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide