RetrogeneDB ID:
retro_mputfur_428
Organism:
Location:
GL896909.1:12597146-12597718 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
74.09 %
Coverage:
67.97 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
TSPAN17
Parental gene aliases:
No gene alias available
Parental gene description:
tetraspanin 17 [Source:HGNC Symbol;Acc:13594]

Genomic region (view in browser)





>retro_mputfur_428
ACCTTTCTGCTCAAGTTTTTCTCCGTGTTCTTGGGTCTCATCGTCTTCCCGGAGCTGGCA
TCAGGGATCTTGGCCTTTGTGTTTGAGAACATAATTTGAGACCTGCTCAGTTTCTTCCTC
AACAAAAATGTCAAGGCCTTTCGGGACAACATTGAGTTCCAGAACCTTATTGACTTTGCT
CGGGAATAGCCATCTTGCTATGGAGCCAGGGGGCCTAATGACTGGAACCTCAATATTTAT
TTCAACTGCACTGACTTGAACTCTAGCTGGGAGCACTGCACGGTGTCCTCCTGCTGCATC
AGAGACCCTGCAGAGATGTCCTCAGCACCCAATGTGGCTCAGACTCCAGGCTCAAACTGG
AGCTGGAGCAGCAGAGCTCCATCCACACCAAAGGCTGCTACGTGGACCAGTTCGACAAGT
GGCTGCAGGACAACCTGAATGCTGTGGCTGGAGTCTTTGCGGCCATCACCCTCCTCCAGA
TCTTTGGTATCTCTTTGGCCCAGAGCCTTGTGAATGATATCAAAGCAGTGAAGGCCAACT
GGTGAAGCTGCCACAGTGGCCATGACTACCTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TFLLKFFSVFLGLIFFLELATGILAFVFKDWIRDQLNFFINNNVKAYRDDIDLQNLIDFAQEYWSCCGARGPNDWNLNIYFNCTDLNPSRERCGVPFSCC
TFLLKFFSVFLGLI.F.ELA.GILAFVF...I.D.L.FF.N.NVKA.RD.I..QNLIDFA.E..SC.GARGPNDWNLNIYFNCTDLN.S.E.C.V..SCC
Retrocopy
TFLLKFFSVFLGLIVFPELASGILAFVFENII*DLLSFFLNKNVKAFRDNIEFQNLIDFARE*PSCYGARGPNDWNLNIYFNCTDLNSSWEHCTVS-SCC


Parental protein
VRDPAE-DVLNTQCGYDVRLKLELEQQGSIHTKGC-VGQFEKWLQDNLIVVAGVFVGIALLQIFGICLAQNLVSDIKAVKANWIKHDDGYKLL
.RDPAE.DVL.TQCG.D.RLKLELEQQ.SIHTKGC.V.QF.KWLQDNL..VAGVF..I.LLQIFGI.LAQ.LV.DIKAVKANW.....G...L
Retrocopy
IRDPAE/DVLSTQCGSDSRLKLELEQQSSIHTKGCYVDQFDKWLQDNLNAVAGVFAAITLLQIFGISLAQSLVNDIKAVKANW*SCHSGHDYL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide