RetrogeneDB ID:
retro_mputfur_431
Organism:
Location:
GL896909.1:22183205-22183727 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
83.62 %
Coverage:
85.92 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
BTF3
Parental gene aliases:
No gene alias available
Parental gene description:
basic transcription factor 3 [Source:HGNC Symbol;Acc:1125]

Genomic region (view in browser)





>retro_mputfur_431
TCAACCCCTCGTCCCCCAACATGGTCCCATTTCCACTCCAACAAGATGAAAGAAACTATC
ACGAACCAGGAGAAACTCACCAAACTGCAAGCACAAGTGTGCATTGGTGGGAAAAGAACT
GCTCACCAAAAGAAGGTGGTTCATAGAACAGCTACAGCAGATGATAAACTTCAGTTCTCC
TTAAAGAAGTTAGGGGTAAACAGTATCTCTGGTTCTGAAGAAGTGAGTATGTTCACAAAC
CAAGGAACAGTGATCCACTTTAACAACCCCAAAGTTCAGGCACTGCTGGCAGCGAACACT
TTCACCATTACAGGCCATGCTGAGACAAAGCAGCTGACAGAAATGCTACCCTGTATCTTA
AACCAACTTGGTGCAGACAGTCTAACTAGCTGAAGATGACTGGCTGAAGCTCTGCCCAAA
CAATCTGTGGATGGAAAAGCACCACTTGCTACTGGAGAGGAGGATGATGAAGTTCCAGAT
CTTGTGGAGAATTTTGATGAAGCTTCCAAGAATGAAGCAAAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SLPPPRGGTRGQEPQMKETIMNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAA
S.P.P..........MKETI.NQEKL.KLQAQV.IGGK.TA..KK.VVHRTATADDK.LQFSLKKLGVN.ISG.EEV.MFTNQGTVIHFNNPKVQA.LAA
Retrocopy
STPRPPTWSHFHSNKMKETITNQEKLTKLQAQVCIGGKRTAHQKK-VVHRTATADDK-LQFSLKKLGVNSISGSEEVSMFTNQGTVIHFNNPKVQALLAA


Parental protein
NTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDDDDEVPDLVENFDEASKNEAN
NTFTITGHAETKQLTEMLP.ILNQLGADSLTS.R.LAEALPKQSVDGKAPLATGE..DDEVPDLVENFDEASKNEAN
Retrocopy
NTFTITGHAETKQLTEMLPCILNQLGADSLTS*R*LAEALPKQSVDGKAPLATGE-EDDEVPDLVENFDEASKNEAN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide