RetrogeneDB ID:
retro_mputfur_435
Organism:
Location:
GL896909.1:11950031-11950449 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
71.92 %
Coverage:
50.35 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
CLNS1A
Parental gene aliases:
No gene alias available
Parental gene description:
chloride channel, nucleotide-sensitive, 1A [Source:HGNC Symbol;Acc:2080]

Genomic region (view in browser)





>retro_mputfur_435
GTGTCCAGGGATCTAAGTGCCTATCCACGAGAGTATTTCTATGTTATGGTGAATGCCAGA
TCTGGGGAAGAATCAAAAGAATCTGTTGCTGAAGAGAAGACAGTGATGATAATGTTGAAC
CTCTTGCTGAATTTAGATTTGTGCTTAGTGATAAATCAGCAATGCTCACTGCACTGTGTG
AATGCCAGGCTTTGCATCCAGATCCTGAGGATGATGATTCAGATGATTGTGATGGAGCAG
AATAGGATATGGAAGCCCAGGATAAGAGCAGGAAGACATCCTTCCATTTTACACCTATGA
AGAAGGATTATCCCATTTAACAGCAGAAGGCCAAGCCGCACTGACGATATCAGAACGAAT
GCTCTCTCAGTCTGTACGCAGCCTGTGTAACATGGCTGGAGTCTGGACAAGATTCAGT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VSRDLNAYPREHLYVMVNAKFGEESKESVTEEE-EDSDDDGEPIAEFRFVPSDKSALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQG-QGDI
VSRDL.AYPRE..YVMVNA..GEESKESV..EE.EDSDD..EP.AEFRFV.SDKS...AM.TA.CECQALHPDPED.DSDD.DG.E.D.EA.....Q.DI
Retrocopy
VSRDLSAYPREYFYVMVNARSGEESKESVA-EE/EDSDDNVEPLAEFRFVLSDKS---AMLTALCECQALHPDPEDDDSDDCDGAE*DMEAQDKS/QEDI


Parental protein
PTFYTYEEGLSHLTAEGQATLERLEGMLSQSVSSQYNMAGVRTEDS
..FYTYEEGLSHLTAEGQA.L...E.MLSQSV.S..NMAGV.T..S
Retrocopy
LPFYTYEEGLSHLTAEGQAALTISERMLSQSVRSLCNMAGVWTRFS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide