RetrogeneDB ID:
retro_mputfur_436
Organism:
Location:
GL896909.1:13317613-13318498 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
93.9 %
Coverage:
81.72 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
SEPT2
Parental gene aliases:
No gene alias available
Parental gene description:
septin 2 [Source:HGNC Symbol;Acc:7729]

Genomic region (view in browser)





>retro_mputfur_436
ATCATCCCCGGAGCTGTAGAGAAAATTGAAAGAACTGTCCAGATTGAGGCTTCGACTGTG
GAGATCGAGGAGCGAGGGGTCAAGCTACGCCTGACAGTGGTGGACGCGCCTGGCTATGGG
GACGCCACCAACTGCAGGGATTGTTTTAAGACCATCATCTCCTACATCGATGAGCAGTTT
GAACGGTACCTGCATGACGAGAGTGGCTTGAACAGACGGCACATCATTGATAATAGAGTG
CACTGCTGCTTTTACTTTATCTCGCCCTTTGGACACGGACTTAAGCCTTTAAACGTCGCA
TTTATGAAAGCAATACACAATGAGGTGAACATCGTGCCTGTCATTGCCAAAGCTGACACG
CTCACCCTGAAGGAACGGGAGCACTTGAAGAAGAGGATTCTGGATGAAATTGAAGAACAT
AATATCAAAATCTATCATTTACCTGATGTAGAATCAGATGAAGATGAGGACTTTGAAGAG
CAGACTAGACTTCTCAAGGCCAGTATCCCATTCTCTGTGGTTGGATCCAATCAGTTGATT
GAAGCCAAGGGCCAGAAGGTCAGAGGCTGCCTCTACCCGTTGGGCGTTGTGGAGGTGGAG
AACCCGGAGCACAGTGACTTTCTGAAGCTGCGGACGATGCTCATCACCCACATGCAGGAT
CTCCAGGAGGTGACTCAGGACCTTCACTATGAAAACTTCTGCTCTGAGAGGCTCAAGAGA
GGCAGCAGGAAAGTGGAAAACGAGGACATGAATAAAGACCAGATCCTGCTGGAGAAGGAA
GCAGAGCTCTGCTGCATGCAGGAGATGATCGCCAGGATGCAGGCGCAGATGCAGCTGCAA
ATGCAGGGTGGGGACGGCGACAGCGGGGCCCATGGGCATCGTGTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
IIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVA
IIPGA.EKIERTVQIEASTVEIEERGVKLRLTVVD.PGYGDA.NCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPL.VA
Retrocopy
IIPGAVEKIERTVQIEASTVEIEERGVKLRLTVVDAPGYGDATNCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLNVA


Parental protein
FMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRGRLYPWGVVEVE
FMKAIHN.VNIVPVIAKADTLTLKERE.LKKRILDEIEEHNIKIYHLPD.ESDEDEDF.EQTRLLKASIPFSVVGSNQLIEAKG.KVRG.LYP.GVVEVE
Retrocopy
FMKAIHNEVNIVPVIAKADTLTLKEREHLKKRILDEIEEHNIKIYHLPDVESDEDEDFEEQTRLLKASIPFSVVGSNQLIEAKGQKVRGCLYPLGVVEVE


Parental protein
NPEHNDFLKLRTMLITHMQDLQEVTQDLHYENFRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQLQMQGGDGDGGAHGHHV
NPEH.DFLKLRTMLITHMQDLQEVTQDLHYENF.SERLKRG.RKVENEDMNKDQILLEKEAEL..MQEMIARMQAQMQLQMQGGDGD.GAHGH.V
Retrocopy
NPEHSDFLKLRTMLITHMQDLQEVTQDLHYENFCSERLKRGSRKVENEDMNKDQILLEKEAELCCMQEMIARMQAQMQLQMQGGDGDSGAHGHRV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide