RetrogeneDB ID:
retro_mputfur_439
Organism:
Location:
GL896909.1:19587451-19587780 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
76.79 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
PHF5A
Parental gene aliases:
No gene alias available
Parental gene description:
PHD finger protein 5A [Source:HGNC Symbol;Acc:18000]

Genomic region (view in browser)





>retro_mputfur_439
ATGACTAAACATCATCTGGATTTGATCTTCTGCCGCAAGCAGGCTGGTGTTGCCATCGAA
AGACTATGTGAAAAATGTAATGGCAAATGTGTGATCTATGACTCCTACCTGTGTCCCTAC
ACTCTGGTATGCATATGTGATGAGTGTAACTATGGCTCTTACCAGACGCTGTGTGATCTG
GGGAGGCCCTGGGGTCTCAGATGCCTATTATTGTAAGGAGTACACACATCCAGGCAAAGG
ATAGAGATGGTTGCCCAAAGACTGTCAATTAGGGGAGCTTTATGACCCTTCTCTTCTATG
AATACAAAAGGTATGGCTTCAAGAAGAGG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGP-GVSDAYYCKECT-IQEKDRDGCPKIVNLGSSKTDL
M.KHH.DLIFCRKQAGVAI.RLCEKC.GKCVI.DSY..P.TLV.ICDECNYGSYQ..C...G.P.GVSDAYYCKE.T.IQ.KDRDGCPK.VN.GS..T.L
Retrocopy
MTKHHLDLIFCRKQAGVAIERLCEKCNGKCVIYDSYLCPYTLVCICDECNYGSYQTLCDL-GRP\GVSDAYYCKEYT\IQAKDRDGCPKTVN*GSFMTLL


Parental protein
FYERKKYGFKKR
FYE.K.YGFKKR
Retrocopy
FYEYKRYGFKKR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide