RetrogeneDB ID:
retro_mputfur_440
Organism:
Location:
GL896909.1:21251854-21252846 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
82.58 %
Coverage:
88.53 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
ACTB
Parental gene aliases:
No gene alias available
Parental gene description:
actin, beta [Source:HGNC Symbol;Acc:132]

Genomic region (view in browser)





>retro_mputfur_440
ATGGATGACGATATCGCTGCTCTGGTGGTCCACAACGGCTCCCGCATGGGCAAAGCCGGC
TTCACAGGTGACAATGCCCCCCAAGCCATCTTCCCTTCCATCGAGGGGTGCCCACAGCAC
CAGGGTGTGATGGTGGGCATGGGCCAGAAGGACTCCTGTGTGCCCGAGGAGACCCAGAGC
AAGAAGGGCATCCTGACCTTGAAGCACCCCATCGAGCACAGTATTGTCACCAACTGGGAT
GACATGGAGAAGATCTGGCACCACACCATCTACAGTGAACTGCGTGTGACCCCAGAGGAG
CACCCCGTGCTGCTGACCAATGCCCCACTGAACCCCAGGCCAACTGTGAGAAGATGACCC
AGATGATGTTCCAGACCTTCAACACCCCGGCCATGTATGTGGCCATCCAGGCTGTGCTGT
CCCTGTACGCCTCTGGCCACGATGGCATCGTGATGGACTCCAGGGACGGGATCATCCATA
CTGTGCCCATCTACGAGGGGTACACCCTGCCCGACGCCATCCTGCATCTGGACCTGGCTG
GCCGGGACCTGACGGACTACCTCATGAAGATCCTTAAGGAGCGCGGCTATAGCTTCACCA
CCACTGCCGAGCGGGAAATCGTGCATGACATCAAAGAGAAGCTGTGTTATGTGGCCCTGG
ACTTCGAGCAGGAGAAGGCCACTGCGGACTTCAGGTCCTCCCTGAAGAAGAGCTATGAGC
TGCCTGATGGGCAGGTCATCACCATTGGCAACAAGCAGTTCCACTGCCCAGAGGTGCTCT
TCCAGCCTTCCTTCCTGGGCATGGAATCCTGCAGCATCCACGAAGCTACCTTCAACTCCA
TCACGAAGTGTGACATCGACATCCGCGAGGACCTGTACGCCAGCACGGTGCTGTCCGGCG
GGACCACCAGGTACCCAGGCATTGCCATCAGGATGCAGAAGGAGATCATCACCTTGGCGC
CCAGCAAGATGAAGAGCAAGATCATCGCCCCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEE
MDDDIAALVV.NGS.M.KAGF.GD.AP.A.FPSI.G.P.HQGVMVGMGQKDS.V..E.QSK.GILTLK.PIEH.IVTNWDDMEKIWHHT.Y.ELRV.PEE
Retrocopy
MDDDIAALVVHNGSRMGKAGFTGDNAPQAIFPSIEGCPQHQGVMVGMGQKDSCVPEETQSKKGILTLKHPIEHSIVTNWDDMEKIWHHTIYSELRVTPEE


Parental protein
HPVLLTEAPLNPK-ANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYS
HPVLLT.APLNP..AN.EKMTQ.MF.TFNTPAMYVAIQAVLSLYASG...GIVMDS.DG..HTVPIYEGY.LP.AIL.LDLAGRDLTDYLMKIL.ERGYS
Retrocopy
HPVLLTNAPLNPR/ANCEKMTQMMFQTFNTPAMYVAIQAVLSLYASGHD-GIVMDSRDGIIHTVPIYEGYTLPDAILHLDLAGRDLTDYLMKILKERGYS


Parental protein
FTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVL
FTTTAEREIV.DIKEKLCYVALDFEQE.ATA...SSL.KSYELPDGQVITIGN..F.CPE.LFQPSFLGMESC.IHE.TFNSI.KCD.DIR.DLYA.TVL
Retrocopy
FTTTAEREIVHDIKEKLCYVALDFEQEKATADFRSSLKKSYELPDGQVITIGNKQFHCPEVLFQPSFLGMESCSIHEATFNSITKCDIDIREDLYASTVL


Parental protein
SGGTTMYPGIADRMQKEITALAPSTMKIKIIAP
SGGTT.YPGIA.RMQKEI..LAPS.MK.KIIAP
Retrocopy
SGGTTRYPGIAIRMQKEIITLAPSKMKSKIIAP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide