RetrogeneDB ID:
retro_mputfur_441
Organism:
Location:
GL896909.1:23477902-23478308 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.74 %
Coverage:
85.53 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
SNRPC
Parental gene aliases:
No gene alias available
Parental gene description:
small nuclear ribonucleoprotein polypeptide C [Source:HGNC Symbol;Acc:11157]

Genomic region (view in browser)





>retro_mputfur_441
ATGTCTAGGTTTTAACATGACGGCTGTGACACATTCCTCACCCATGATTCTCCATCTGTG
AGGAGGACACACTGCAGTGGTAGGAAACAGAAAGAGAATGTGAAAGACTACTATGAGAAA
TGGATGGACGAGCAGGCTCAGAGCCTGATCAACAAAATGAGTCCTGCTTTTCAATAAGGA
AATCTACCTCCTTCTCCATTTGCTGTTTCTCCTCCTGCAGGGACAATGATCCTACCACCC
CCAGTCTTCTGGGTCCTCCTCACCCTGGTATGACGTCAGCACCCTATATGGGGACCCTCT
CATGATGCCAATGATGGGTCCTCCTCCTCCTGGGGTGATGCCAGTGGGACCTGCTCCTGG
AATGAGCCTGCCTACGGGAGGCCACATGTCAATGATAAAACCTCCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LSRFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPP-PSLPGPPRPGMMPAPHM-G
.SRF..D.CDT.LTHDSPSVR.THCSGRK.KENVKDYY.KWM.EQAQSLI.K...AFQ.G..PP.PF...PPAG.MI.PP.PSL.GPP.PGM..AP.M.G
Retrocopy
MSRF*HDGCDTFLTHDSPSVRRTHCSGRKQKENVKDYYEKWMDEQAQSLINKMSPAFQ*GNLPPSPFAVSPPAGTMILPP/PSLLGPPHPGMTSAPYM/G


Parental protein
GPPMMPMMGPPPPGMMPVGPAPGMRPPMGGHMPMMPGP
.P.MMPMMGPPPPG.MPVGPAPGM..P.GGHM.M...P
Retrocopy
DPLMMPMMGPPPPGVMPVGPAPGMSLPTGGHMSMIKPP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide