RetrogeneDB ID:
retro_mputfur_443
Organism:
Location:
GL896910.1:1738441-1739167 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
95.87 %
Coverage:
99.59 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
RPS3
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S3 [Source:HGNC Symbol;Acc:10420]

Genomic region (view in browser)





>retro_mputfur_443
ATGGTGGTGCAGATTTCCAAGAAGAGGAAGTTTGTCGCTGATGGCATCTTCAAAGCTGAA
CGGAATGAGTTCCTCACTCGGGAGCTGGCTGAAGATGGCTACTCCGGGGTTGAGGTCCGA
GTTACACCAACCAGGACAGAAATCATTATTTTGGCCACCAGGACACAGAATGTTCTTGGT
GAGAAGGGCCGCCGGATCCGAGAATTAACTGCTGTGGTTCAGAAGAGGTTTGGTTTCCCC
GAGGGCAGTGTAGAGCTTTATGCTGAAAAGGTGGCTACAAGAGGTTGGTGTGCTATTGCC
TAGGCAGAGTCTCTGCGTTACAAACTCCTAGGAGGCCTTGCTGTGCGGAGGGCCTGCTAT
GGTGTGCTGAGGTTCATCATGGAGAGTGGGGCCAAAGGCTGTGAGGTCGTGGTATCTGGG
AAACTCCGAGGACAGAGGGCTAAATCCATGAAGTTTGTGGATGGCCTGATGATTCACAGT
GGGGACCCTGTTAACTACTACGTTGACATGGCTGTGCGCCCTGTGCTGCTCAGACAGGGT
GTGCCTGGCATCAAAGTGAAGATCATGCTTCCTTGCGACCCAAGTGGTAAGATTGGCCCT
AAGAAGCCCCTGTCAGATCATGTGAGCATTGTGGAACCCAAAGATGAGATACTGCCCACC
ACCCCCATCTCGGAATAGAAAGGTGGGAAGCCAGAGCCTCCTGCTATGCCACAGCCAGTA
CCCACA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIA
M.VQISKKRKFVADGIFKAE.NEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRG.CAIA
Retrocopy
MVVQISKKRKFVADGIFKAERNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGWCAIA


Parental protein
QAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGP
.AESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVD.AVR.VLLRQGV.GIKVKIMLP.DPSGKIGP
Retrocopy
*AESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDMAVRPVLLRQGVPGIKVKIMLPCDPSGKIGP


Parental protein
KKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPVPT
KKPL.DHVSIVEPKDEILPTTPISE.KGGKPEPPAMPQPVPT
Retrocopy
KKPLSDHVSIVEPKDEILPTTPISE*KGGKPEPPAMPQPVPT


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide