RetrogeneDB ID:
retro_mputfur_444
Organism:
Location:
GL896910.1:8504601-8505228 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
71.29 %
Coverage:
77.9 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CAPNS1
Parental gene aliases:
No gene alias available
Parental gene description:
calpain, small subunit 1 [Source:HGNC Symbol;Acc:1481]

Genomic region (view in browser)





>retro_mputfur_444
ATAGTTGGAGGAATCGTGAATTTCATCAGCGAGGCCGCAGCAGCTCAGTACACCCCAGAA
CCGCCTCCCACTCAGCAGCATTTCACGACCGTGGAGGCCAATGAAAGTGAGGAAGTTCGT
CGGTTTCGACAGCAGTTTGCCCAGCTGGCGGGACCGGACATGGAGGTGGGTGCCACCGAC
CTAATGAATATTCTCAACAAAGTCCTTTCCAAGCACAAGGACCTGAAGACCGACGGCTTT
AGCCTTGACACCTGCCGGAGCATCGTGTCCGTGATGGACAGTGACACAACCGGCAAGCTG
GGTTTCGAAGAATTTAAATACCTCTGGAACAACATCAAGAAGTGGCAGTGTGTTTATAGG
CAGTATGACAGGGACCGCTCTGGGTTCCTGGGACGTTCCCAGCTGCGTGAGGCCCTGCAG
GCAGCGGGTTTCCAGCTAAATGAGCAGCTTTACCAAATGATCGTCCGCCGCTATGCCGAT
GAGGACGGCAGCATGGATTTCAACAACTTCATCAGCTGCCTGGTCCGCCTGGATGCCATG
TTCCGTGCCTTCAGATCCCTGGATAGGGATGCAGACGGTCTGGTTCAAGTGTCGCTCCAA
GACTGGCTGCAACTGACCATGTATTCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ILGGVISAISEAAA-QYNPEPPPPRTHYSNIEANESEEVRQFRRLFAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKL
I.GG....ISEAAA.QY.PEPPP...H....EANESEEVR.FR..FAQLAG.DMEV.AT.LMNILNKV...H.DLKTDGF..DTCRS.V.VMDSDTTGKL
Retrocopy
IVGGIVNFISEAAAAQYTPEPPPTQQHFTTVEANESEEVRRFRQQFAQLAGPDMEVGATDLMNILNKVLSKHKDLKTDGFSLDTCRSIVSVMDSDTTGKL


Parental protein
GFQEFKYLWNNIKKWQAIYKQFDVDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYSDEGGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQ
GF.EFKYLWNNIKKWQ..Y.Q.D.DRSG....S.L..A..AAGF.LNE.LY.MI.RRY.DE.G.MDF.NFISCLVRLDAMFRAF.SLD.D..G..QV..Q
Retrocopy
GFEEFKYLWNNIKKWQCVYRQYDRDRSGFLGRSQLREALQAAGFQLNEQLYQMIVRRYADEDGSMDFNNFISCLVRLDAMFRAFRSLDRDADGLVQVSLQ


Parental protein
EWLQLTMYS
.WLQLTMYS
Retrocopy
DWLQLTMYS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide