RetrogeneDB ID:
retro_mputfur_449
Organism:
Location:
GL896910.1:6722286-6723037 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
66.8 %
Coverage:
84.46 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
Rpl5
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L5 [Source:MGI Symbol;Acc:MGI:102854]

Genomic region (view in browser)





>retro_mputfur_449
ACACATAAATACAGAATGATGGTCCATGTAACCAACAGAGAGATCATTTATCACACTGCT
CATGCTCAGACAGAAGGAAATATGATAGCTTGTGCAGCTCTCATGCTCATGAACTCCCAA
AATATGGTGATGGCTGGCCTGACAAGTAAGCTGCTGCATATTGTGTGGACCCGCTGCTGG
CCTGTAGGCTTCTCAACAGGTTTGGCAGAGACAAGATCTATGAAGGCCAAATGCAAGTGA
TTAAAGACAAATGCAACGTGGAAAGCATGGATGATCAATCTGTGCCTTCACTTGCTATCT
GGATACAGGGCTGGCCAGAACTACTACTGGAAATAAAGTTTTGCAGACCCTCAAGGGAGC
TGTGGATGAAAGCTTGTCTGTTGCTCACAGTACCAAACGATTCCTTGGTTATGATATGAA
AAGCAAGGAATTCAACGCAGAAGTACAAGGGAAGCATGTCATGGGTCAGAACACCGCAGA
TTAGATGTGTTACCTAACAGAAGAAGGTGAAGATGCTTATAAGGAACAATTCTGTTAATA
CATAAAGAACAAAGAACCTCTAGATAATGCTGAGGAGATGTATAAGAAAGCTCTTGCTGC
TACATAACAGAATCCAGTCTATGAGAAGAAGCCTAAGAAAGAAGTTAGACGGAAGAGGGG
GAACCATCCCGAACAGTCTTTTGCCCAGAAGAAAGACCAGGTAGATCAGAAGAAGGCAAG
CTTCCTTAGAGCTCAGGAGCAGGCTGCTGAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNY-AAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPG-AFT
T.KYRM.V.VTNR.II...A.A..EG.MI.CAA.........V..GLT...AAAYC...LLA.RLLNRFG.DKIYEGQ..V..D..NVES.D.Q...AFT
Retrocopy
THKYRMMVHVTNREIIYHTAHAQTEGNMIACAALMLMNSQNMVMAGLTSK/AAAYCVDPLLACRLLNRFGRDKIYEGQMQVIKDKCNVESMDDQSV/AFT


Parental protein
CYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPD-MEEMYKKA
CYLD.GLARTTTGNKV...LKGAVD..LS..HSTKRF.GYD..SKEFNAEV..KH.MGQN.AD.M.YL.EE.EDAYK.QF..YIKN....D..EEMYKKA
Retrocopy
CYLDTGLARTTTGNKVLQTLKGAVDESLSVAHSTKRFLGYDMKSKEFNAEVQGKHVMGQNTAD*MCYLTEEGEDAYKEQFC*YIKNKEPLDNAEEMYKKA


Parental protein
HAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAE
.AA...NPVYEKKPKKEV..KR.N.P..S.AQKKD.V.QKKASFLRAQE.AAE
Retrocopy
LAAT*QNPVYEKKPKKEVRRKRGNHPEQSFAQKKDQVDQKKASFLRAQEQAAE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide