RetrogeneDB ID:
retro_mputfur_461
Organism:
Location:
GL896911.1:5152485-5153607 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
92.78 %
Coverage:
99.73 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
ACTB
Parental gene aliases:
No gene alias available
Parental gene description:
actin, beta [Source:HGNC Symbol;Acc:132]

Genomic region (view in browser)





>retro_mputfur_461
GATGATGAGCTGTCTGCCTTGGTGGTAGATAATGGGTCAGGCATGTGCAAGGCAGGTTTT
GGTGGTGATGATGCCCCCCGGGCTGTGTTCCCCTCCATGGTAGGACGTCCCCGGCATCAG
GGAGTCATGGTTGGCATGGGACAGAAGGACTGCTACGTGGGGGATGAGGCTCAGAGCAAG
AGAGGCATCCTGACTCTTAAGTATCCAATTGAACATGGAGTGGTCACCAACTGGGATGAC
ATGGAGAAGATCTGGCACCACACTTTCTACAACGAACTTCGTGTGGCACCAGATGAGCAT
CCTATCCTCCTCACCGAGGCTCCTCTCAACCCCAAGATCAACCGGGAAAAGATGACTCAG
ATCATGTTTGAGGCCTTCAATACACCGGCCATGTATGTGGCTATCCAGGCTGTGCTCTCC
CTCTATGCCTCTGGGCGGACTACAGGCATCGTAATGGATTCTGGGGATGGGGTTACTCAT
ACCGTGCCCATCTATGAAGGTTATGCTCTGCCTCATGCCATTCTACGCCTGGATCTGGCT
GGCAGAGACCTGACTGACTATCTCATGAAGATTCTGACAGAACGAGGCTACAACTTCACC
ACCACAGCCGAGCGGGAGATTGTTCGTGATGTCAAAGAGAAGCTGTGCTATGTGGCCCTG
GACTTTGAGCAAGAGATGGTCAGTGCTGCTGCATCCTCCTCACTTGAAAGAAGCTATGAG
CTTCCTGATGGGCAAGTCATCACCATTGGTAATGAACGCTTTCGATGCCCTGAATCCATT
TTCCAGCCTTCCTTCCTGGGCATTGAGTCGAGTGGGATCCATGAGACAACTTTCAACTCT
ATCATGAAGTGTGATGTGGATATTCGCAAGGATCTATATGCCAACATCGTGTTGTCTGGA
GGCAGCACCATGTACCCTGGCATTGCTGACCGGATGCAGAAGGAAATCATAACCCTGGCA
CCTAGCACCATGAAAATCAAGATCATAGCTCCCCCAGAGAGGAAGTATTCTGTTTGGATT
GGGGGCTCCATTCTGGCCAGCCTGTCTACATTCCAGCAGATGTGGATCAGTAAGCAAGAA
TATGATGAGGCTGGTCCTCCCATAGTTCATAGAAAATGTTTC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH
DD...ALVVDNGSGMCKAGF.GDDAPRAVFPS.VGRPRHQGVMVGMGQKD.YVGDEAQSKRGILTLKYPIEHG.VTNWDDMEKIWHHTFYNELRVAP.EH
Retrocopy
DDELSALVVDNGSGMCKAGFGGDDAPRAVFPSMVGRPRHQGVMVGMGQKDCYVGDEAQSKRGILTLKYPIEHGVVTNWDDMEKIWHHTFYNELRVAPDEH


Parental protein
PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFT
P.LLTEAPLNPK.NREKMTQIMFE.FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY.FT
Retrocopy
PILLTEAPLNPKINREKMTQIMFEAFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYNFT


Parental protein
TTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG
TTAEREIVRD.KEKLCYVALDFEQEM..AA.SSSLE.SYELPDGQVITIGNERFRCPE..FQPSFLG.ES.GIHETTFNSIMKCDVDIRKDLYAN.VLSG
Retrocopy
TTAEREIVRDVKEKLCYVALDFEQEMVSAAASSSLERSYELPDGQVITIGNERFRCPESIFQPSFLGIESSGIHETTFNSIMKCDVDIRKDLYANIVLSG


Parental protein
GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
G.TMYPGIADRMQKEI..LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE.GP.IVHRKCF
Retrocopy
GSTMYPGIADRMQKEIITLAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPPIVHRKCF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide