RetrogeneDB ID:
retro_mputfur_462
Organism:
Location:
GL896911.1:5332247-5332666 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
67.38 %
Coverage:
89.47 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
PLP2
Parental gene aliases:
No gene alias available
Parental gene description:
proteolipid protein 2 (colonic epithelium-enriched) [Source:HGNC Symbol;Acc:9087]

Genomic region (view in browser)





>retro_mputfur_462
ACCAACTTTTCCTACACTGGAAAAGAAGTTCTTCGGTTTGCCGAGATTACATCTTGGCTG
GTGATTCTGACCTGCTCCAGCACCTCCACACCAGGACCCTCCTCCCTGCTGGTGGTTGAG
ATGATCCTTGCCACTATCTTTTTTGCCATCAACATGTGTGACCTACAAACCAAGATAGAG
ACCATCAACTGGCCTTGGAGTGATTTCTTGCAGACCCTCACAGTGGCCATCCTCTATCTG
ATCACCTCCACTACTGTCCTTATCGAGAGAGGAAACCACTCCCAAATTCTCACAGGGTTA
TTGGGCCTAATCGCTACCTGCCACTTTGGCTATGCTGCCTATATGATGCCTATGATCACC
TTACCCTAGAAGCAGAAAGACATACAGCAGCCCCCACTGACCTTGCAGATGGCACAGTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TNFSRTRKGILLFAEIILCLVILICFSASTPGYSSLSVVEMILAAIFFVIYMCDLHTKIQIINWPWSDFFRTLIAAILYLITSIVVLVEGGNHSKIIAGV
TNFS.T.K..L.FAEI...LVIL.C.S.STPG.SSL.VVEMILA.IFF.I.MCDL.TKI..INWPWSDF..TL..AILYLITS..VL.E.GNHS.I..G.
Retrocopy
TNFSYTGKEVLRFAEITSWLVILTCSSTSTPGPSSLLVVEMILATIFFAINMCDLQTKIETINWPWSDFLQTLTVAILYLITSTTVLIERGNHSQILTGL


Parental protein
LGLLATSLFGYDAY----ITFP-LRQQRHTAAPTDPADGPV
LGL.AT..FGY.AY....IT.P.L...RHTAAPTD.ADG.V
Retrocopy
LGLIATCHFGYAAYMMPMITLP/LEAERHTAAPTDLADGTV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide