RetrogeneDB

RetrogeneDB ID:
retro_mputfur_47
Organism:
Ferret ( Mustela_putorius_furo )
Location:
GL897042.1:3634212-3636048 (-)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
ENSMPUG00000019441
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
72.5 %
Coverage:
93.98 %
Frameshifts:
0
Stop codons:
0


Parental gene:
ENSMPUG00000004342
Parental gene symbol:
DDX43
Parental gene aliases:
No gene alias available
Parental gene description:
DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Source:HGNC Symbol;Acc:18677]

Genomic region (view in browser)





>retro_mputfur_47
GGCGGTGGTGGCAGTGGAAGGGGCAGAAGTGGCAGAGGATGGAGCGGCCCCGCCGGCCAC
ACAGAGGTGAGAGCCTCAGGCCCCGGGGAGCCACCTCTCTGCTTTAGATTGAAGAACAAT
ATGATTGGAGTGGTGATTGGTCGTGGTGGATCAAAGATAAAAGATATCCAGGCTACAACA
AGTACCAAAATACAGATCATAAAAGGTGATTGTGAAGCAGAGGTAAAAATTTTTGGCACA
AAGGACATGAAAGCAAAGGCCAAAGCAACTATAGATGCTCTTGTTAAAAAACAAGAACGA
GGCCACCATTCAGAGTCCCGCGTCGATAGTGCCGCACCTCAGGCCTCTGCTGGAAAAGAG
CTCCGCCCAGATAACACTGGTGCTAAACAGGTTCAACCACTGATAGACTGGGACCAAATC
AGAGCAGAAGTTGTAGAGTGGGAAAAAAGAAAATGGGCAGATTTACCACCAATTAAGAAA
AACTTCTATGTAGAATCTGAAGCAACGAGCTCGTTGTCTGAAGCTGAAGTAGATATGTGG
AGAAAGGAAAACTTTGACATAATGTGTGACGACTTGAAAGATGGCCAAAAGCGCCCCATT
CCCAACCCTACTTGGCAATTTGAGGATGCCTTCCATCCTTACCCTGAACTTATGAAAAGC
ATTAGACGAGCAGGTTTTCAAAAGCCAACACCCATTCAGTCACAGGCATGGCCAATTATT
CTAAAAGGAATAGATCTTATAGGAGTTGCTCAAACTGGAACAGGCAAAACATTGTCCTAT
TTAATGCCTGGGTTTATTCATCTCAATAATCAACCAATACCTAGAGAGGAAAGAAATGGG
GCTGGCATGCTAGTCCTTACACCCACTAGAGAATTAGCTCTTCAGGTGGAAGCTGAATGT
TCTAAGTATTCATATAAAGGTCTTAAAAGTGTTTGTATATATGGCGGTGGAAGTAGAGAA
CGACAAATTCGAGATATTACCAAAGGCATAGATATCATTATTGCAACTCCTGGACGACTG
AATGATCTGCAAATGAATAACTTTGTCAACTTACGAAGCATAACCTACTTAGTCTTAGAT
GAAGCAGATAAAATGCTAGATCTGGGGTTTGAACACCAGATAATGAAGATTTTATTAGAT
GTGCGCCCAGACCGCCAGACTATTATGACAAGTGCAACTTGGCCAGATACCATTCGTCGA
CTTGCTCAGTCTTACCTGAAACAACCTATGATTGTTTATGTTGGTACTCTGGATCTAGTT
GCTGTTAATACAGTGAAGCAAAATGTAATTGTTACCACAGAAGAAGAAAAACGATCTCTT
ATCCAAGAGTTCTTACAGGGTCTGTCACCCCACGACAAAGTCATTGTGTTTGTCAGCAGA
AAACTTGTTGCCGATGACTTATCAAGTGATTTGAGCATCCAGGGCATACCAGTGCAATCA
TTGCATGGCGACAGGGAGCAGCATGACCGTGAACGAGCACTGGAGGACTTTAGAAGTGGA
AAAGTGAAAATACTGATTGCTACTGATTTAGCATCCAGAGGTCTTGATGTCAATGATGTC
ACACACGTATATAATTATGACTTCCCACGCAATATTGAAGAATATGTACACAGAGTGGGA
AGAACAGGAAGAGCAGGGAGAACAGGCGTATCAGTCACCCTCATGACTCAGAATGATTGG
AAGATTGCCATTGAATTGATTAAAATTCTGAAACGAGCAAATCAGAGTGTCCCTGAAGAT
CTCCTAACAATGGCTGAGCGATTCAAAATGCACAAACAAAAAAAGGACACAGGAAAAAAA
CTGAAATCTCCAGGAAAACCCAGAGAATTTTACTGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GSEARRGGRGGGLKNSGLQQPVTAGLREPPLCFGLKNVWVGAVIGRGGSKIKDIQSTTNTKIQIIKGHSEEAEVRIFGDKVMQVKAKTVIDNLVKKQEN-
GS...R.GRG......G.......G..EPPLCF.LKN...G.VIGRGGSKIKDIQ.TT.TKIQIIKG..E.AEV.IFG.K.M..KAK..ID.LVKKQE..
Retrocopy
GSGRGRSGRGWS-GPAGHTEVRASGPGEPPLCFRLKNNMIGVVIGRGGSKIKDIQATTSTKIQIIKGDCE-AEVKIFGTKDMKAKAKATIDALVKKQERG


Parental protein
YSSKLRADVVAFQPSVGRDVKTDSNVTEN-QPLIDWDQIREDALKWGRKKWEDLPPIKKNFYVESETTSSMSQVQIDTWRKENYNIMCDDLKEGEKRHIP
..S..R.D..A.Q.S.G.....D.......QPLIDWDQIR.....W...KW.DLPPIKKNFYVESE.TSS.S....D.WRKEN..IMCDDLK.G.KR.IP
Retrocopy
HHSESRVDSAAPQASAGKELRPDNTGAKQVQPLIDWDQIRAEVVEWEKRKWADLPPIKKNFYVESEATSSLSEAEVDMWRKENFDIMCDDLKDGQKRPIP


Parental protein
NPTCKFEDAFQCFPEVMENIKKAGFQKPTPIQSQSWPIVLQGIDLIGVAQTGTGKTLSYLMPGFIHLDSQPVIRGERNGPGMLVLTPTRELALQVESECS
NPT..FEDAF...PE.M..I..AGFQKPTPIQSQ.WPI.L.GIDLIGVAQTGTGKTLSYLMPGFIHL..QP..R.ERNG.GMLVLTPTRELALQVE.ECS
Retrocopy
NPTWQFEDAFHPYPELMKSIRRAGFQKPTPIQSQAWPIILKGIDLIGVAQTGTGKTLSYLMPGFIHLNNQPIPREERNGAGMLVLTPTRELALQVEAECS


Parental protein
KYSYKGLKSVCIYGGGDRNGQIQDLKKGVDIIIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTIMTSATWPYAVRRL
KYSYKGLKSVCIYGGG.R..QI.D..KG.DIIIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLD.GFE.QIMKILLDVRPDRQTIMTSATWP...RRL
Retrocopy
KYSYKGLKSVCIYGGGSRERQIRDITKGIDIIIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTIMTSATWPDTIRRL


Parental protein
AQSYLKEPMIVYVGTLDLVAVSTVKQNIIVTTEEEKRSHIQTFLESMSPKDKVIVFVSRKAVADHLSSDLILRQVSVESLHGNREQSDRERALENFKTGK
AQSYLK.PMIVYVGTLDLVAV.TVKQN.IVTTEEEKRS.IQ.FL...SP.DKVIVFVSRK.VAD.LSSDL......V.SLHG.REQ.DRERALE.F..GK
Retrocopy
AQSYLKQPMIVYVGTLDLVAVNTVKQNVIVTTEEEKRSLIQEFLQGLSPHDKVIVFVSRKLVADDLSSDLSIQGIPVQSLHGDREQHDRERALEDFRSGK


Parental protein
VRILIATDLASRGLDVLDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGISITLLTRNDWRVAGELINILERAQQSIPEDLVAMAKRYEANKLKKEMEKKM
V.ILIATDLASRGLDV.D.THVYNYDFPRNIEEYVHRVGRTGRAGRTG.S.TL.T.NDW..A.ELI.IL.RA.QS.PEDL..MA.R....K.KK...KK.
Retrocopy
VKILIATDLASRGLDVNDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSVTLMTQNDWKIAIELIKILKRANQSVPEDLLTMAERFKMHKQKKDTGKKL


Parental protein
GKPQGKPQKFY
..P.GKP..FY
Retrocopy
KSP-GKPREFY


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide






stat4u