RetrogeneDB ID:
retro_mputfur_470
Organism:
Location:
GL896911.1:7152630-7152982 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
66.67 %
Coverage:
85.4 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
RPL28
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L28 [Source:HGNC Symbol;Acc:10330]

Genomic region (view in browser)





>retro_mputfur_470
GTCTCCACCCACCTGCAGTGGTGGTCGTGCGAAACTGCTCCAGCTTCCTGATCAAGAGAA
ACAAGCAGACACACAACACGGAGCCCAATAACCTGAAGGCTCGCAACTCCTTCTGCTACA
ACCTGCTGATTTACCGCAAGACTGCGAGGCTTAGACCCGGTGCCCCCATGGCACGGCTAT
AGCGATGGTCATGAAATGGAGATCCAGCCAGTGAAAACCCGCCACCTCCTACGTGCAGAC
CACCATCAACAAGAATGCCCGGGCCCCCCTCAGCAGCATCAGACACGTGACATGCAAGAA
CAGGGACTGCCCGGATCTGCGCATGTCTGCCGATTGCAGAATCCCCGCGCTA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSAHLQW-MVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTV-GVEPAAD-GKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSVRHMI
.S.HLQW..VVRNCSSFLIKRNKQT..TEPNNLKARNSF.YN.LI.RKT..G..P....G.....VMK.RS.Q.KPATSYV.TTINKNARA.LSS.RH..
Retrocopy
VSTHLQW/VVVRNCSSFLIKRNKQTHNTEPNNLKARNSFCYNLLIYRKTA\GLDPVPP\GTAIAMVMKWRSSQ*KPATSYVQTTINKNARAPLSSIRHVT


Parental protein
RKNKYRPDLRMAAIRRASAI
.KN...PDLRM.A..R..A.
Retrocopy
CKNRDCPDLRMSADCRIPAL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide