RetrogeneDB ID:
retro_mputfur_472
Organism:
Location:
GL896911.1:13853783-13855277 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
70.6 %
Coverage:
62.22 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
PCDHA3
Parental gene aliases:
No gene alias available
Parental gene description:
protocadherin alpha 3 [Source:HGNC Symbol;Acc:8669]

Genomic region (view in browser)





>retro_mputfur_472
AGAACCTTATTTTGGAAGTTAATGTCGTATGCGATGTTCGGCTCTCAAAGAAGGGGATTG
GGCACTCAGCGTCTGCTGCTGTCGCTTCTCCTCCTTTCAGTCTGGGAGGCCGGCAGTGGC
CAGGTCCACTACTCGGTCCTGGAGGAGGCCAAACACGGCACCTTCGTGGGCCGCATCGCT
CAGGATTTGGGGCTGGAGCTGGCGGCGCTGGTGCCGCGCCTTTTCCGAGTGGCGTCCAAG
GGTCACGGGGATCTTCTGGAGGTAAATCTACAGAATGGCATTTTGTTTGTGAATTCTCGG
ATCGACCGGGAGGAGCTGTGCGGGCGGAGCACAGAGTGTAGCATCCACCTGGAGGTGATC
GTGGACAGGCCGCTGCAGGTTTTCCATGTGGAGGTGGAGGTGAAGGATATTAATGACAAC
CCACCGGTCTTCTCTCTCAAAGAACAAAAGCTGCTGATTTCTGAATCTAAGCAACCCGGC
TCTCATTTTCCTCTAGAGGGAGCTTCCGATGCGGATATAGGAGAGAATGCTCTATTGACT
TACAGACTAAGTCAAAATGAGTATTTTTCTTTAGAAGTACCAACACATAGTAAGCAGACT
AAAAGACTGTCGCTTACATTAAAACAATATCTGGATCGAGAGAAAACTCCAGAACTTAAT
TTGCTATTGACAGCTGCAGACGGGGGGAAACCAGAGCTCACTGGCACCGTTCAGCTTTTC
ATCCAAGTCTTGGATATTAACGACAATGATCCGGAATTTGAGCAATCAGAATACAAGGTG
AGATTGATGGAAAACGCTGCTAAAGAAACATTTGTGATAAAGCTAAACGCCACAGATCGA
GACGAAGGAGTCAATGGGGAGATAGCCTACTCTTTGATGTCAGTGAAGCCCAAAGGAAAA
CTCTTGTTTATACTAGATGAAAATAACGGAGAATTGAGGGTCAATGGAACTTTAGATTAT
GAGGAAAACAAGTTTTATGAAATTGAAGTACAGGCCACAGATAAAGGGAATCCCCCAATG
GCAGGTCACTGTACAGTCTGGGTAGAAATATTAGACGCCAATGATAATGCCCCTGAAGTC
ACCGTGACTTCCCTGTCTCTCCCAGTACGAGAGGACACTCACCCTAGTACTGTCATTGCG
CTGATCAGTGTATCTGACCGTGACTCTGGTGCCAACGGGCAGGTGATCTGTTCTCTAACG
CCAAACGTCCCTTTCAAGCTCATGTCCACGTTCAAAAATTACTATTCATTGGTGCTGGAT
GGCGCTTTGGACCGCGAGAGCGTGTCGAGCTATGCTCTAGTAGTGATCGCACGGGACGAG
GGATCGCCTCCGCTCTCCGCCACCGCCAGCGTGCCCGTGGAAGTGGCGGACGTGAACGAC
AACGCGCCGGCGTTCGCGCAGCCCGAGTACACGGTGTTCGTGAAGGAGAACAACCCGCCC
GGCTGCCACATCTTCACGGTGTCGGCGCGGGACGCGGACGCGCAGGAGAACGCG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RRNIWERLA-TVFSWREEGSGARQLLLSLLLLTIWETGSGQVHYSVLEEAKHGTFVGRIAQDLGLELAELVPRLFRVASKGHGDLLEVNLQNGILFVNSR
R...W.......F.....G.G...LLLSLLLL..WE.GSGQVHYSVLEEAKHGTFVGRIAQDLGLELA.LVPRLFRVASKGHGDLLEVNLQNGILFVNSR
Retrocopy
RTLFWKLMSYAMFGSQRRGLGTQRLLLSLLLLSVWEAGSGQVHYSVLEEAKHGTFVGRIAQDLGLELAALVPRLFRVASKGHGDLLEVNLQNGILFVNSR


Parental protein
IDREELCGRSLECSIHLEVIVDRPLQVFHVEVEVKDINDNQPVFPTAVKKLFIYESRLPGSRIPLEGASDADIGANSLLTYSLNSNDYFTLDIKRNDANI
IDREELCGRS.ECSIHLEVIVDRPLQVFHVEVEVKDINDN.PVF.....KL.I.ES..PGS..PLEGASDADIG.N.LLTY.L..N.YF.L.........
Retrocopy
IDREELCGRSTECSIHLEVIVDRPLQVFHVEVEVKDINDNPPVFSLKEQKLLISESKQPGSHFPLEGASDADIGENALLTYRLSQNEYFSLEVPTHSKQT


Parental protein
KSLGLVLKKVLNREDTPEHHLLITAVDGGKPELTGTTQVKITILDVNDNAPEFERSVYKVSLFENAPNGTLAVIVNASDLDEGVNKDIVYSFNTDMSADT
K.L.L.LK..L.RE.TPE..LL.TA.DGGKPELTGT.Q..I..LD.NDN.PEFE.S.YKV.L.ENA...T.....NA.D.DEGVN..I.YS.........
Retrocopy
KRLSLTLKQYLDREKTPELNLLLTAADGGKPELTGTVQLFIQVLDINDNDPEFEQSEYKVRLMENAAKETFVIKLNATDRDEGVNGEIAYSLMSVKPKGK


Parental protein
LSKFHLDPVSGYISVKGNIDFEDTKLYEIQVDATDKGNPPMAGHCTVLVEILDVNDNVPELVIKSLSLPVLEDTPLGTVLALISVSDRDSGANGQLTCTL
L..F.LD...G...V.G..D.E..K.YEI.V.ATDKGNPPMAGHCTV.VEILD.NDN.PE....SLSLPV.EDT...TV.ALISVSDRDSGANGQ..C.L
Retrocopy
L-LFILDENNGELRVNGTLDYEENKFYEIEVQATDKGNPPMAGHCTVWVEILDANDNAPEVTVTSLSLPVREDTHPSTVIALISVSDRDSGANGQVICSL


Parental protein
SPHVPFKLVSTFKNYYSLVLDSALDRESVSNYELVVTARDGGSPSLSATASMSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFKTKGASDADIRANA
.P.VPFKL.STFKNYYSLVLD.ALDRESVS.Y.LVV.ARD.GSP.LSATAS..VEVADVNDNAPAFAQPEYTVFVKENNPPGCHIF.T..A.DAD...NA
Retrocopy
TPNVPFKLMSTFKNYYSLVLDGALDRESVSSYALVVIARDEGSPPLSATASVPVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIF-TVSARDADAQENA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide