RetrogeneDB ID:
retro_mputfur_474
Organism:
Location:
GL896911.1:16549947-16550860 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
73.86 %
Coverage:
76.13 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_474
GTATCACCTGCAGAAATTAGGGCCACCAAATATTACATGACCATCACTGATGCCCCAGGC
CACCGAGACTTCATGAAAAACATGATTAGAGGTGTATTTCAGGCTGATTGCTGTCCTGAT
TGTTGCTACTGCTGGTGGTGAATCTGAAGCAGGTTTCTCCAAGAATGGGCAGACCCATGA
GCATGCCCTTCTTCTGGCTTACACACTACGTGTAGAAGAACTAATTGCTGGCATTAACAA
AATGGATTCCATTGAGCCACCCTACCATCAGATGAGATATGAAGAAATCGTTAGTGAAGC
CAGCGCCTACAGTAAGAAAACTGGCTACAACCCCAACACAGTAGTAGCATTTGTGCCAAT
TTCTGGTTGGCATGGTGACAATATGCTGGAGCCAAGAGCTAACCTGCCTTGGTTCAAATG
ATGGAAAGTCACCAGGAAAGATGAGAATGCCAGTAGAACCACACTGCTTGAAGCTCTGGA
TTGCATTCTGCCACCAGCACATCCAACTGACAAGCCCTTGCATCTGCCTCTCTGGGACAT
CTACAAAATTGGTGGTATTGGTACTATTCCTACGGACTGAGTGGAGACTGGTGTTCTTAA
ATCTGGCATGGTGGTCACCTTAGCTCCAGTCAATGTTACAAATGAAGTAACGTCTGTTGA
AAAGCAACATGAAGCTCTGAGAGAGGCTCTTCCTGGGGACAATGTGGGTTTCAACATCAA
GAACGTATCTTTCAAAGACGTTCATCGTGGCAATATGGCTGGTGACAGCAAAAATGACCT
ATCCATGGAAACAGCTGGCCTCACAGCTCAGGTGATTATCCTGAACCATCCAGCCTAAAT
CAGTGCTGGATACATGTCTGTGTGGGATTGTCACAAAGCCCACACTGCTCACAAATTTGC
TGAGCTGAAGAAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADC-AVLIVAAGVGEFEAGISKNGQTREHA-LLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVK
.S.......KYY.TI.DAPGHRDF.KNMI.G..QADC.......AG.GE.EAG.SKNGQT.EHA.LLAYTL.V..LI.G.NKMDS.EPPY.Q.RYEEIV.
Retrocopy
VSPAEIRATKYYMTITDAPGHRDFMKNMIRGVFQADC\VLIVATAG-GESEAGFSKNGQTHEHALLLAYTLRVEELIAGINKMDSIEPPYHQMRYEEIVS


Parental protein
EVSTYIKKIGYNPDT-VAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGV
E.S.Y.KK.GYNP.T.VAFVPISGW.GDNMLEP.AN.PWFK.WKVTRKD.NAS.TTLLEALDCILPP..PTDKPL.LPL.D.YKIGGIGT.P...VETGV
Retrocopy
EASAYSKKTGYNPNTVVAFVPISGWHGDNMLEPRANLPWFK*WKVTRKDENASRTTLLEALDCILPPAHPTDKPLHLPLWDIYKIGGIGTIPTD*VETGV


Parental protein
LKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK
LK.GMVVT.APVNVT.EV.SVE..HEAL.EALPGDNVGFN.KNVS.KDV.RGN.AGDSKND..ME.AG.TAQVIILNHP..ISAGY..V.DCH.AH.A.K
Retrocopy
LKSGMVVTLAPVNVTNEVTSVEKQHEALREALPGDNVGFNIKNVSFKDVHRGNMAGDSKNDLSMETAGLTAQVIILNHPA*ISAGYMSVWDCHKAHTAHK


Parental protein
FAELKE
FAELK.
Retrocopy
FAELKK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide