RetrogeneDB ID:
retro_mputfur_476
Organism:
Location:
GL896912.1:2867000-2867396 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
63.04 %
Coverage:
96.4 %
Frameshifts:
4
Stop codons:
0


Parental gene:
Parental gene symbol:
Rps17
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S17 [Source:MGI Symbol;Acc:MGI:1309526]

Genomic region (view in browser)





>retro_mputfur_476
GGCCAAATTCACACCAAAACCATGAAAAAGACAGGCTGTGGCGTCACTGAAAAGTACTAC
TCATGCCTGGGCAATGACATCCGTACCAGTGTATGTGACAGAGATTACCATTATTCCCAG
GAAGAAACTCTGCAACAAGATAGCAGCTTTGCCACACATGAGACGAAGCAGCTTCAGAAA
GGCTCAGTGAGAAATATCTCCAACAAGCTGCAGCAGGAGGAGACAGAAAGTAGAGATAAC
TGTGTGCCTGAGGTCTCAGCCCTGGATCAAGAGATCAATGAAGTAGAAGCCTGACACTAA
GGAAATATTGAAATTCTTAGAATCTGGCAGTATGTCCAACCTGCAGTTCACGCAGCCTAC
AGTCCGGATGAATTTCAAACACCATGTGGAGCCATT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCE-EIAIIPSKKLRNKIAG-YVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVD
G...TKT.KK......EKYY..LGND..T...VC..EI.IIP.KKL.NKIA....TH..K..Q.G.VR.IS.KLQ.EE.E.RDN.VPEVSALDQEI.EV.
Retrocopy
GQIHTKTMKKTGCGVTEKYYSCLGNDIRTS--VCD\EITIIPRKKLCNKIAA/FATHETKQLQKGSVRNISNKLQQEETESRDNCVPEVSALDQEINEVE


Parental protein
-PDTKEMLKLLDFGSLSNLQVTQPTVGMNFK-TPRGAV
.PDTKE.LK.L..GS.SNLQ.TQPTV.MNFK.TP.GA.
Retrocopy
\PDTKEILKFLESGSMSNLQFTQPTVRMNFK/TPCGAI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide