RetrogeneDB ID:
retro_mputfur_487
Organism:
Location:
GL896913.1:13149884-13150429 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
75.4 %
Coverage:
54.79 %
Frameshifts:
4
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_487
TCTGATGCAAAGAAAAGTGAATTATATGATAAAAGAGGAGAATAGGCAATGAAAGAAGGC
AGAGTTCCTGGTGGTTTGGGCTCCCCTATGGCATCTTTGAAATGTCTTTGGAGGAGGAGG
AGGGATACAGAGAGAAAGGTGAGGTAAAAACGTTGTGCATCACCTCTAGTCACCTTAGAA
GATTTATATAACTATGCAACAAGAAATCTAGCTCTGCAAAAGAACATGATATATGACAGA
TGTGAAGGCCGGGATGGTAAGAAAGGAGTAGTAGAATGTTGTCCCAATTGCCAAGGTACT
GGAATGCAAATAAGAATTCATCAGCTAGGACCTGGAACAGTTCAGCAACTTCAGTCTGTG
TGTATGGAGCTCCAGGGCCCCAGGGAAGAGACTGGCCCTAAAGGCAGATGTAAAACTGCA
ATGGAAGGAAGACAGTTTGAGAGAAAAAGATTCTAGAAGTCCATATTGACAAAGACATGA
AAGATGTCCAGAAAATAACATTCTATGGTGAAGGAGACCAAGAACGAGGACTGGAAGCAG
GAGAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SDAKKRELYDKGGEQAIKEGGAGGGFGSPM-DIFDM-FFGGGGRMQRERRGKNVVHQL-SVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPN
SDAKK.ELYDK.GE.A.KEG...GG.GSPM..IF.M..FGGGG..QRER.GKNVVH.L..VTLEDLYN.ATR.LALQKN.I.D.CEGR.GKKG.VECCPN
Retrocopy
SDAKKSELYDKRGE*AMKEGRVPGGLGSPM/GIFEM/VFGGGGGIQRER*GKNVVHHL/LVTLEDLYNYATRNLALQKNMIYDRCEGRDGKKGVVECCPN


Parental protein
CRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCK-SCNGRKIVREKKILEVHIDKGMKDGQKITFHGEGDQEPGLEPGD
C.GTGMQIRIHQ.GPG.VQQ.QSVCME.QG..E...PK.RCK..CNGRK.V.EKKILEVHIDK.MKD.QKITF.GEGDQE.GLE.GD
Retrocopy
CQGTGMQIRIHQLGPGTVQQLQSVCMELQGPREETGPKGRCK/NCNGRKTV*EKKILEVHIDKDMKDVQKITFYGEGDQERGLEAGD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide