RetrogeneDB ID:
retro_mputfur_488
Organism:
Location:
GL896914.1:6079608-6080045 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
56.67 %
Coverage:
100.0 %
Frameshifts:
4
Stop codons:
1


Parental gene:
Parental gene symbol:
Rpl26
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]

Genomic region (view in browser)





>retro_mputfur_488
ATGAAGTTTAATCCCTTTGTGACTTCTGACGGGAACCAGAGCTGTGAAAGACATTTCGAT
GTGTTCTCCCACATTTGTGGGAAGATTATGTTTTCCCCCTCTTTGCAAAGAGCTGAGGCA
GAAGTACAGTGTTTGAGCCAAGCCCATCTGAAGCGTGGTAGAGTCCGGGTTGTGCCAGCT
CACTCCAAAGGTCAGCAGATTGACAGAGTGGTCCGGGTTTACAAGAAGACCTACGGCGTC
TACACTGCGCGAGTACATCCAGCGGGACAGGGCGCAGGGCACAGCTGTCCATGTGGGCAT
TCACCCTCGCGAGATGGTTATCACTGGACCAAAACCTGACAGAGACCACAAAACGATCCT
GGGATGGAAAAGCCAAATCTCGCCAAGTAGGAAAGGAAAAGGGCACATACCAGGAGACAA
TTGAGAAGATGCAGGAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSS-PLSKELRQKYNVRSMPI-RKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQ-REKANGTTVHV
MKFNPFVTSD......RHF...SHI..KIM.S.PL.KELRQKY.V...PI..K...V.VV..H.KGQQI..VV.VY.K.Y..Y..RV.......G.....
Retrocopy
MKFNPFVTSDGNQSCERHFDVFSHICGKIMFS\PLCKELRQKYSV*AKPI/LKRGRVRVVPAHSKGQQIDRVVRVYKKTYGVYTARVHPAGQGAGHSCPC


Parental protein
GIHPSK-VVITRLKLDKDRKKIL-ERKAKSRQVGKEKGKYKEETIEKMQE
G..PS...VIT..K.D.D.K.IL...KAKSRQVGKEKG.Y..ETIEKMQE
Retrocopy
GHSPSR\MVITGPKPDRDHKTIL\DGKAKSRQVGKEKGTY-QETIEKMQE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide