RetrogeneDB ID:
retro_mputfur_493
Organism:
Location:
GL896914.1:14280573-14280905 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
56.9 %
Coverage:
54.81 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
RPS8
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S8 [Source:HGNC Symbol;Acc:10441]

Genomic region (view in browser)





>retro_mputfur_493
ATGGGCATCTCCGGGGACCGCTGGTGGAGGTGCTTCGAGGCCAAGGGCAAGAGAAATCCC
TACCACAAGAAGCACAAGTATGGGCTGGGACGCCCCGCTGCCGATGCTAAGCTTGGCGTA
CTCACAGTCCACGCTCGGGGAGGCAGTTAAGAAAGTACCAGGCCTTGAGGCTGGACATGG
GGAACGTCTCCTGGGATTCCAAGTGTCCTACACACAAAACAAGGATTGTTGACCTCTGCC
GTGCATCCAGCAATGAGCTGGTCGGCCCCAACGCCCCGGTTCAGAACTGGATTGTGCTTA
TTGACAGCGCCCTGTACCCACAGTGGAGCGAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGN-KK-YRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVK
.GIS.D.W.......GKR.PYHKK.KY.LGRPAA..K.G.....TV..RGG..KK.Y.ALRLD.GN.SW.S.C.T.KTRI.D....AS.NELV.....V.
Retrocopy
MGISGDRWWRCFEAKGKRNPYHKKHKYGLGRPAADAKLG---VLTVHARGGS\KK\YQALRLDMGNVSWDSKCPTHKTRIVDLC-RASSNELVGPNAPVQ


Parental protein
NCIVLIDSTPYRQWYE
N.IVLIDS..Y.QW.E
Retrocopy
NWIVLIDSALYPQWSE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide