RetrogeneDB ID:
retro_mputfur_496
Organism:
Location:
GL896915.1:13577940-13578360 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.43 %
Coverage:
83.33 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
PABPN1
Parental gene aliases:
No gene alias available
Parental gene description:
poly(A) binding protein, nuclear 1 [Source:HGNC Symbol;Acc:8565]

Genomic region (view in browser)





>retro_mputfur_496
ATGGGGGAACAATCGGAGAAGCTTAAGGAGCTACAGAACGAGGTAGAGAAACAGATGAAT
ATGAGTCCACCTCCACACAATGTTGGCCCAGTGATCATGTCCAGTGAAGAGAAGATGGAG
GCTGATGCCTGTTCTATCTGTGTTGGCAAAGCGGACTATGATGCAACAGCAGAAGGGCCA
GAAGCACTCGTTCATGGCTGTGGTTCAATCAACTGCCTTACCTTACTCTGTGACAGGTCT
AGTGGCCATTCTAAAGGGTTTGCATATATAGAGTTCTCAGACAAAGAGTCAGTGAGGACT
TCCTTGGCCTTAGATGAGTTCCTATTTAGAAGAAGACAAATCAGGGTGATCCCAAAACGA
ACCAATGGACCAGAGTTTCCCATGAGCCCGAGACCATGCTCGACCACCAACTACAACAGT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRT
M.E..EKLKELQNEVEKQMNMSPPP.N.GPVIMS.EEKMEADA.SI.VG..DY.ATAE..EA..HGCGS.N..T.LCD..SGH.KGFAYIEFSDKESVRT
Retrocopy
MGEQSEKLKELQNEVEKQMNMSPPPHNVGPVIMSSEEKMEADACSICVGKADYDATAEGPEALVHGCGSINCLTLLCDRSSGHSKGFAYIEFSDKESVRT


Parental protein
SLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRA
SLALDE.LFR.RQI.VIPKRTN.P......R......Y..
Retrocopy
SLALDEFLFRRRQIRVIPKRTNGPEFPMSPRPCSTTNYNS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide