RetrogeneDB ID:
retro_mputfur_51
Organism:
Location:
GL897138.1:192808-193675 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
57.83 %
Coverage:
50.93 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
OTUD6B
Parental gene aliases:
No gene alias available
Parental gene description:
OTU domain containing 6B [Source:HGNC Symbol;Acc:24281]

Genomic region (view in browser)





>retro_mputfur_51
AACGTCATGGAAGATTCTCAGAGTGAGCAACAGCGGATAATACGACGCCACCACCGCGAG
AAAAAAGAGCTGCAGGCCCGCATCCAGGCCATGAAGAACTCTGTCCCCAAGAGCGACAAA
AAGAGAAGAAAGCAGTTGCTCCTAGACGTGGCCCGCCTCGAGGCCGAGATGGAGCAGAAG
CACCAGCAGGAGCTGGAGAAGTTCCGAGAGAGCTTTCCTGATAACGGCAACCTCGACTCC
GTCACGGAAGATCTCGCCAAGATGGATCTTGAGAACCAGCCTCCCCGGCAGTCCCGGGCA
CAGAGAAGGCGCGAAAGAAGGGCGGCGCTTGAGAGAGAGCGCCAGGAGAGGATCACCGAG
GCCGAGATGGAGCACCTGGCTAGCTTCCGCCGCGATGAGGAGGAGAAGCTCGCCGCCATC
CTAGGATCCAAGAATCTGGAGCTGAAGGATATCCCGGCCGATGGCCACTGCATGTATCGC
GCCATCCAAGACCAGCTGGTGTTCTCGGTGACGGTAGAGAGCCTGCGGAAACGCACCGCC
GATTACATGCGCAAGCACGTGGACGACTTCCTGCCCTTCTTCAGCGACCCGGACACCGGC
AACGCCTACAGCCGCGAAGACTTCTTGAGCTACTGCGACGACATCGTGCGCAGCCCCTCA
TGGGGAGGCCAGCTCGAGCTGAGGGCCCTGTCGCACGTCCTGCAGACACCCATCGAGGTG
ATCCAGGCCGATTCGCCCGCTGTCGTCATCGGCGGGGAGTACACCCGGAAGCCGCTCATC
CTCGTCTACCTGCGCTACGCTTGCAACCTCGGCGAGCACTACAATTCGGTGAGGCCGCTT
GAGGCCGGCGCCGTAGGGGGCGCGGCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SVLAEELDEEEQLMRRHRKEKKELQAKIQGMKNAVPKNDKRRRKQLTEDVAKLEAEMEQKHKEELEQLKLNSKES-KIDSVAVNISNLVLENQPPRISKA
.V......E.....RRH..EKKELQA.IQ.MKN.VPK.DK.RRKQL..DVA.LEAEMEQKH..ELE............DSV........LENQPPR.S.A
Retrocopy
NVMEDSQSEQQRIIRRHHREKKELQARIQAMKNSVPKSDKKRRKQLLLDVARLEAEMEQKHQQELEKFRESFPDNGNLDSVTEDLAKMDLENQPPRQSRA


Parental protein
QKRRDKKAALEKEREERIAEAEIENLSGARHMESEKLAQILAARQLEIKQIPSDGHCMYRAIEDQL
Q.RR...AALE.ER.ERI.EAE.E.L...R..E.EKLA.IL....LE.K.IP.DGHCMYRAI.DQL
Retrocopy
QRRRERRAALERERQERITEAEMEHLASFRRDEEEKLAAILGSKNLELKDIPADGHCMYRAIQDQL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide