RetrogeneDB ID:
retro_mputfur_510
Organism:
Location:
GL896917.1:7476174-7476951 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
94.21 %
Coverage:
99.62 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
Nsa2
Parental gene aliases:
No gene alias available
Parental gene description:
NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1913883]

Genomic region (view in browser)





>retro_mputfur_510
CCACAAAATGAATATATTGAGTTATACCGGAAGCGCTATGGCTATCGTTTGGATTACCAT
GAGAAAAAGAGAAAGAAAGAAGGTCGAGAGGCTCATGAACGTTCAAAGAAGGCAAAAAAG
ATGATTGGTCTGAAAGCTAAGCTCTACCATAAACAGCACCATGGTGAGAAAATACAGATG
AAAAAGACTGTCAAGATGCATGAAAAGAGAAACACCAAACAAAAGAATGATGAAAAGACT
CCACAAGGAGCAGTACCTGCATATCTACTGGACAGGGAGGGACAGTCTCGAGCTAAAGTA
CTTTCTAATATGATTAAACAAAAACAAAAAGAGAAAGCGGGAAAATGGGAAGTTCCTTTA
CCCAAAGTTCGAGCCCAGGGAGAAACAGAAGTATTAAAAGTTATTTGAACAGGAAAGAGA
AAGAAGAAAGCATGGAAAAGAATGGTCACTAAACTCTGCTTTGTTGGAGATGGCTTTACT
TGAAAACCACCTAAATATGAAAGATTCATTAGGCCAATGGGCTTACGTTTCAAAAAGGCC
CATGTAACACATCACGAATTGAAAGCCACCGTTTGCCTGCCAGTTGTTTGTGTAAAAAGA
CATCCTTCATCCCCACTATATACAACTTTGGGTGTTATTACCAAAGGTACTGTAATTGAG
GTGAACGTGAGCGAGTTGGGCCTTGTGACACAAGGAGGCAAAGTTATTTGGGGAAAATAT
GCCCAGGTTACCAACAATCCTGAAAATGATGGATGTATAAATGCAGTCCTGCTGGTT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKV
PQNEYIEL.RKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQ.H.EKIQMKKT.KMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKV
Retrocopy
PQNEYIELYRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQHHGEKIQMKKTVKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKV


Parental protein
LSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKK
LSNMIKQK.KEKAGKWEVPLPKVRAQGETEVLKVI.TGKRKKKAWKRMVTK.CFVGDGFT.KPPKYERFIRPMGLRFKKAHVTH.ELKAT.CLP...VK.
Retrocopy
LSNMIKQKQKEKAGKWEVPLPKVRAQGETEVLKVI*TGKRKKKAWKRMVTKLCFVGDGFT*KPPKYERFIRPMGLRFKKAHVTHHELKATVCLPVVCVKR


Parental protein
NPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV
.PSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV
Retrocopy
HPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide