RetrogeneDB ID:
retro_mputfur_513
Organism:
Location:
GL896917.1:13083965-13084628 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
71.18 %
Coverage:
67.27 %
Frameshifts:
5
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_513
TTGAAGGGTGGGGCCAAAAGGGTCACCATCTCTGCCCCTTTCTGCTGATGCCTCATGTTT
CTGGCGGGCATGAACCATGAGAAGTATGACAACCTCCTCAAGATGGTCAGCAATGCCTCC
TGCACCACCAACTGCTGGCCCCTCTGGCTAAGGTCACCCATGACAACTCGGTGTCATGGA
GGGACTCATGACCACAGTGCATGCCATCATTGCCAACCGAAGACTGTGGACAGCCCTTCT
GGGAAGCTGTGGTATGATGGCTGAGGGGCGGCCCAAAATATCATTCCTCCTTCTACTGGC
ACCATCAAGGTAGTCAAGGTCATCCCTGTGCTGAATGAGAAGCTCAATGGCATGGACTTC
CTGTCCCCATCTGCAATGTCAGTCATGGAACTGACCTGCTTCCTGGAGAAAGCTGCCGAA
CATGATGACATCAAGAAGATGGTGAAACAGGCATCAGGGGCCCCCGCAAGGGCATTCTAG
GCTAAAGTTGAGAACCAGGTTGCCTCCTGAGACCTTAACAGTGATACCCACTCTTACACC
TTTGATAATGGGGCTGGCATTCTCCCTAATGACCACAGTGTCAAACTCATTTCCTGGTAT
GACAGTGAATTTGGCTACAGAAACCAGCTGGTGGACTTTACGGTCCATATGGCCTCCAAG
GAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LKGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNC-LAPLAKVIHDN-FGIVEGLMTTVHAITATQ-KTVDGPSGKLWRDGRGAAQNIIP
LKGGAKRV.ISAP.....MF..G.NHEKYDN.LK.VSNASCTTNC.LAPLAKV.HDN..G..EGLMTTVHAI.A...KTVD.PSGKLW.DG.GAAQNIIP
Retrocopy
LKGGAKRVTISAPFC*CLMFLAGMNHEKYDNLLKMVSNASCTTNC/LAPLAKVTHDN/LGVMEGLMTTVHAIIANR/KTVDSPSGKLWYDG*GAAQNIIP


Parental protein
ASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQAS-EGPLKGILG-YTEDQVVSCDFNSDTHSSTFDAGAGIALNDH
.STG..K.V.KVIP.LN.KL.GM.F..P....SV..LTC.LEKAA..DDIKK.VKQAS..GP.KGILG...E.QV.S.D.NSDTHS.TFD.GAGI..NDH
Retrocopy
PSTGTIKVV-KVIPVLNEKLNGMDFLSPSA-MSVMELTCFLEKAAEHDDIKKMVKQAS/RGPRKGILG\KVENQVAS*DLNSDTHSYTFDNGAGILPNDH


Parental protein
FVKLISWYDNEFGYSNRVVDLMVHMASKE
.VKLISWYD.EFGY.N..VD..VHMASKE
Retrocopy
SVKLISWYDSEFGYRNQLVDFTVHMASKE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide