RetrogeneDB ID:
retro_mputfur_515
Organism:
Location:
GL896917.1:17394806-17395480 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
76.42 %
Coverage:
81.36 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_515
CTTCTAAAATGGAATAGTCATGGTATCTACAACATAAATCTGCAGAGAACCTGGGAGAAG
CTTCTGCTGGCAGCTCATGCCATTGTTGCCATTGAAAACCGAGCTGATGTTGGTGTCATA
TAGTCCAGGAATACTGGCCAGCAGGCTGGGCTGAAGTTTGCTGCTGCTCCTGGAGCCACT
GCTGTGGCCGGCCGCTTCACTCCTGGAATGTTCGCTAACCGGATCCAGGCAGCCTTCTGG
GAGCCCAGACTACTCGTGGTTACTGATCCCAGAGCTGATTACCAGCCTCTCACAGAGGCA
TCTCATGTCAACCTGCCTACCATAGCTCTGTGTAACACAGACCCTCCTCTGTGCTCTGTG
GGCATTGCCTTCCATTGCAACAACAAGGGACCTCACTCAGCGGGTCTGTTGTGGTAGATG
CTGGTCAGGGAAGTTCTGCCCATGCGTGGCACCGTTTCCTGTGAGCGCCCACAGGAGGTC
ATGCCTGATATGTGCTTCTACAGAGATCCCGAAGAGATTGAAAAGAAGAGCAGACCGCTG
CTGAAAAGGTTGTGACCAAGAAGGAGGAATTTCAGGGTGAATGGACGGCGTCTGCTCCTG
AGTTCACGGTTAAAGTCGCAGACTGGTCTGAAGGCGGGCAGGTGCCCTTGGTGCCTGTTG
AGCAGTTCCCTACT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
IYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEA
..K..S.GIY.INL.RTWEKLLLAA.AIVAIEN.ADV.VI.SRNTGQ.A.LKFAAA.GAT..AGRFTPG.F.N.IQAAF.EPRLLVVTDPRAD.QPLTEA
Retrocopy
LLKWNSHGIYNINLQRTWEKLLLAAHAIVAIENRADVGVI*SRNTGQQAGLKFAAAPGATAVAGRFTPGMFANRIQAAFWEPRLLVVTDPRADYQPLTEA


Parental protein
SYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIE-KEEQAAAEKAVT-KEEFQGEWTAPA
S.VNLPTIALCNTD.PL..V.IA..CNNKG.HS.GL.W.ML.REVL.MRGT.S.E.P.EVMPD..FYRDPEEIE.KEEQ.AAEK.VT.KEEFQGEWTA.A
Retrocopy
SHVNLPTIALCNTDPPLCSVGIAFHCNNKGPHSAGLLW*MLVREVLPMRGTVSCERPQEVMPDMCFYRDPEEIE/KEEQTAAEKVVTKKEEFQGEWTASA


Parental protein
PEFTATQPEVADWSEGVQVPSVPIQQFPT
PEFT.....VADWSEG.QVP.VP..QFPT
Retrocopy
PEFTV---KVADWSEGGQVPLVPVEQFPT


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide