RetrogeneDB ID:
retro_mputfur_519
Organism:
Location:
GL896917.1:4948072-4948425 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.67 %
Coverage:
73.58 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
SNRPC
Parental gene aliases:
No gene alias available
Parental gene description:
small nuclear ribonucleoprotein polypeptide C [Source:HGNC Symbol;Acc:11157]

Genomic region (view in browser)





>retro_mputfur_519
ATGGCTACCTTTTATTGTGACTACTGTGACCCATACCTCACCCTGGACTTTCCGTCTGTG
AGGAAGACACGCTGCCGCAGTAGAAACACAAAGAGGAGAAAGCCTACTATCAGAAATGGA
TGGAAGAGCAGGCTCAGAGCCTGATCAACAAAACAACTGCTGCATTACCGCAAGGAAGGG
CTCCCCCTCCACCATTCTCTGCTCCTCCTCCTGCAGGGGCAATGATCCCACCTCCCCCTA
GTCTCCCCGGTCCTCCTTGCCCTGGTAGGATGCCAGCACCTGCTATGGGAGGCCCTCCTC
CTGCTGGGATGATGCCAGTGGGACTAGCTCCTGGAATGAGACTGCCTATGGGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LSRFYCDYCDTYLTHDSPSVRKTHCSGR-KHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGG
...FYCDYCD.YLT.D.PSVRKT.C..R.KHKE..K.YYQKWMEEQAQSLI.KTTAA..QG..PP.PFSAPPPAGAMIPPPPSLPGPP.PG.MPAP.MGG
Retrocopy
MATFYCDYCDPYLTLDFPSVRKTRCRSR/KHKEE-KAYYQKWMEEQAQSLINKTTAALPQGRAPPPPFSAPPPAGAMIPPPPSLPGPPCPGRMPAPAMGG


Parental protein
PPMMPMM--GPPPPGMMPVG
PP...MM..G..P....P.G
Retrocopy
PPPAGMMPVGLAPGMRLPMG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide