RetrogeneDB ID:
retro_mputfur_532
Organism:
Location:
GL896918.1:15725035-15725445 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
81.88 %
Coverage:
69.19 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
FCF1
Parental gene aliases:
No gene alias available
Parental gene description:
FCF1 rRNA-processing protein [Source:HGNC Symbol;Acc:20220]

Genomic region (view in browser)





>retro_mputfur_532
TATAACACCCAGCTGGGCCTACCATACCACATCCTGGTTGATACCAACTTCATCAACTTT
TCCATTAAAGTCAAACTTGACTTAGTACAATCAATGATGGACTGTCTCTATGCTAAGTGT
ATCCCTTGTATAACTGACTGTGTAATGGATGAAACTGAGACACTGGGGCAAAAGTATTGA
GTAGTTCTAAAGACCTCCAAGGATCCAAGATTTGAATGGTTACCATGCACACACAAAGGA
ATCTATGCAGATGCCTGCTTAGTACAGAGAGGAACTGAGCACAAGTGTTATATTGTGGCT
ACAGTTGACCAGGACCTTAAAGGAAGAATCCAGAAGATCCCTGGAGTTCCCATCATGTAC
ATTTCTAACATAGGTACAACGTTGAGCAGATGCTAGAAAATAATGGAGCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
YNTQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVA
YNTQLG.PYHILVDTNFINFSIK.KLDLVQSMMDCLYAKCIPCITDCVM.E.E.LGQKY.V.L...KDPRFE.LPCTHKG.YAD.CLVQR.T.HKCYIVA
Retrocopy
YNTQLGLPYHILVDTNFINFSIKVKLDLVQSMMDCLYAKCIPCITDCVMDETETLGQKY*VVLKTSKDPRFEWLPCTHKGIYADACLVQRGTEHKCYIVA


Parental protein
TVDRDLKRRIRKIPGVPIMYISN-HRYNIERMPDDYGA
TVD.DLK.RI.KIPGVPIMYISN.HRYN.E.M....GA
Retrocopy
TVDQDLKGRIQKIPGVPIMYISN/HRYNVEQMLENNGA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide