RetrogeneDB ID:
retro_mputfur_538
Organism:
Location:
GL896918.1:7789951-7790351 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
66.67 %
Coverage:
90.54 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
SSBP1
Parental gene aliases:
No gene alias available
Parental gene description:
single-stranded DNA binding protein 1, mitochondrial [Source:HGNC Symbol;Acc:11317]

Genomic region (view in browser)





>retro_mputfur_538
AAGACTGTATTACAGGTATTTCATGAGTTTATAAGACATGAATCTGAAATAGCTAGCAAT
TTGTTTCTCAAAAGATCTCTGAATCATGTGCAGTTACTTAGGTGAGTAGGTCAGGATCTC
GTCATGAGACAGGTACAAGGGAAAAACCCAGCCAATGTTTTCTCCAGCAACAAAAGAGTC
GTGCAATCAGGGACAAGTGAAACGTACCAAATGGGTGATGTTAGTCAGAAGACAAGGTGG
TACAGAATTTCAGTATTCTGACCAAGCCTCAGAGATGGGGCACATGAGTATGTGAAAAAG
GGGTCCCGAACATATGCAGAAGGGAAAGTAGACAATCGTGAATACACAGATAAAAATAAT
GTGAGACAATGGAGCAGCAAGAGTCATAGCTGATAACATA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RPVLQVFHQFVRRESEVATSLVLERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGESEAYQMGDVSQKTTWHRISVFRPGLRDVAYQYVK
..VLQVFH.F.R.ESE.A..L.L.RSLN.VQLL..VGQD.VMRQV.GKNP...FS........SG.SE.YQMGDVSQKT.W.RISVF.P.LRD.A..YVK
Retrocopy
KTVLQVFHEFIRHESEIASNLFLKRSLNHVQLLR*VGQDLVMRQVQGKNPANVFS-SNKRVVQSGTSETYQMGDVSQKTRWYRISVF*PSLRDGAHEYVK


Parental protein
KGSRIYVEGKVDYGEYTDKNNVRR-QATTIIADNI
KGSR.Y.EGKVD..EYTDKNNVR...A...IADNI
Retrocopy
KGSRTYAEGKVDNREYTDKNNVRQ\GAARVIADNI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide