RetrogeneDB ID:
retro_mputfur_539
Organism:
Location:
GL896918.1:8302380-8303384 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
93.75 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
Ldhb
Parental gene aliases:
No gene alias available
Parental gene description:
lactate dehydrogenase B [Source:MGI Symbol;Acc:MGI:96763]

Genomic region (view in browser)





>retro_mputfur_539
ATGGCAACTCTTAAGGAAAAACTGATTGCACCAGTTGCAGAAGAAGAGGCAGCCGTCCCA
AACAATAAGATCACTGTAGTGGGTGTTGGACAAGTTGGTATGGCCTGTGCCATCAGCATT
CTGGGAAAGTCCCTGGCTGATGAACTTGCCCTTGTGGATGTTTTGGAAGATAAACTCAAA
GGAGAAATGATGGATCTGCAGCATGGGAGCTTATTTCTTCAGACACCTAAAATTGTGGCA
GATAAAGATTACTCTGTGACTGCCAGTTCTAAGATTGTGGTGGTGACTGTGGGAGTCCGC
CAGCAGCAGGGAGAGAGAGCCGTCTCAATCTGGTGCAGAGGAATGTTAATGTCTTCAAAT
TCATTATTCCGCAGATAGTCAAGTACAGTCCTGATTGTATCATAATTGTGGTTTCCAACC
CAGTGGATATTCTCACATATGTTACCTGAAAACTAAGTGGACTACTTAAGCATCGTGTGA
TCGGAAGTGGGTGTAATCTGGATTCTGCAAGATTTCGCTATTTTATGGCTGAAAAACTTG
GCATTCATCCCAGCAGCTGCCATGGATGGATTTTGGGAGAACGTGATAATTCAAGTGTGG
CTGTGTAGAGTGGAGTGAATGTGGCAGGTGTTTCTCTTCAGGAACTCAATCCAGATATGG
GAACAGACAACAATAGTGAAAATTGGAAGGAAGTGCATAAAATGGTGGTGGAAAGTGCCT
ATGAAGTCATCAAGCTAAAAGGATATACCAACTGGGCTATTGGATTAAGTGTGGCTGATC
TCATTGAGTCCATGTTGAAAAATCTATCCAGGATTCATCCAGTGTCAACAATGGTGAAGG
GGATGTATGGCATTGAGAACGAAGTCTTCCTGAGCCTTCCTTGTATCCTGAACGCTCGGG
GCTTAACCAGTGTGATCAACCAGAAGCTGAAAGATGATGAGGTTGCCCAGCTCAAGAAAG
GTGCAGATACCTTGTGGGACATCCAGAAAGACCTAAAAGATCTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MATLKEKLIAPVAEEDAAVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKI-VVVTAGV
MATLKEKLIAPVAEE.AAVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTA.SKI.VV.....
Retrocopy
MATLKEKLIAPVAEEEAAVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTASSKIVVVTVGVR


Parental protein
RQQEG-ESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSS
.QQ...ESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVT.KLSGL.KHRVIGSGCNLDSARFRY.MAEKLGIHPSSCHGWILGE...SS
Retrocopy
QQQGE/ESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVT*KLSGLLKHRVIGSGCNLDSARFRYFMAEKLGIHPSSCHGWILGERDNSS


Parental protein
VAVWSGVNVAGVSLQELNPDMGTDNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIENEVFLSLPCILNA
VAV.SGVNVAGVSLQELNPDMGTDN.SENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIENEVFLSLPCILNA
Retrocopy
VAV*SGVNVAGVSLQELNPDMGTDNNSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIENEVFLSLPCILNA


Parental protein
RGLTSVINQKLKDDEVAQLKKSADTLWDIQKDLKDL
RGLTSVINQKLKDDEVAQLKK.ADTLWDIQKDLKDL
Retrocopy
RGLTSVINQKLKDDEVAQLKKGADTLWDIQKDLKDL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide