RetrogeneDB ID:
retro_mputfur_540
Organism:
Location:
GL896918.1:9246759-9247321 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.13 %
Coverage:
69.89 %
Frameshifts:
6
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_540
AGGACCAAGGGCAAGGAGTGAATCCATCACACCAAGCTGGGCCATCTGGTCAAGGACATG
AAGATCAAGTCCCTGGAGGAGATCTATCTCTTTTCCCTGCCTATTAAGGAATCTGAGATC
ATTGATTTTTTTCCTGGGGGCATACCTCAAGGATGAGGTTTTAAAGATTTTGCCTATATA
AAACCAGACCTGTGCTGGACAGCAGTCTAGGTTTAAGGCATTTGTTGTCATTGGAGATTA
CAATGGACATCTTGGTCTGGGTGTGAAATACCCCAGGAAGGTAGCCACTGCCATCTGTGG
GGCCACCATCCTGGCCAAGCTTTCCATTATCTCCCTTCCGGGATGCTACTGGAGGAATGA
GATTGGCAAGCCTACACCATCCCATGTAAGGTGACCAGTGACTGTGGCTCTGGCTGATGT
GTCTCATCTTTGCCCTCAGAGGTATTGGCATCACTTTAGTCCCTGTGCACAAGAAGCTCC
TGATGATGGCTGGACTGATGACTGCTATACCTTGGCTGGGGCTGCACTGCCACCCTGGGT
TAACTTCGCCAAGACTACGTTT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFF-LGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIR
....KE.I..TKLG.LVKDMKIKSLEEIYLFSLPIKESEIIDFF.LGA.LKDEVLKI.P...QT.AGQ..RFKAFV.IGDYNGH.GLGVK....VATAI.
Retrocopy
RTKGKE*IHHTKLGHLVKDMKIKSLEEIYLFSLPIKESEIIDFF\LGAYLKDEVLKILPI*NQTCAGQQSRFKAFVVIGDYNGHLGLGVKYPRKVATAIC


Parental protein
GAIILAKLSIVPVRRGYWGNKIGKP-HTVPCKVTGRCGS-VLVRLIPAPRGTGIVSAPVPKKLLMMAGI-DDCYTSAR-GCTATLG-NFAKATF
GA.ILAKLSI......YW.N.IGKP..T.PCKVT..CGS..L..LI.A.RG.GI...PV.KKLLMMAG..DDCYT.A..GCTATLG.NFAK.TF
Retrocopy
GATILAKLSIISLPGCYWRNEIGKP/YTIPCKVTSDCGS/WLMCLIFALRGIGITLVPVHKKLLMMAGL/DDCYTLAG/GCTATLG\NFAKTTF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide