RetrogeneDB ID:
retro_mputfur_542
Organism:
Location:
GL896918.1:14021490-14022009 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
94.35 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
PPIH
Parental gene aliases:
No gene alias available
Parental gene description:
peptidylprolyl isomerase H (cyclophilin H) [Source:HGNC Symbol;Acc:14651]

Genomic region (view in browser)





>retro_mputfur_542
ATGGAGGTGGCAAATTCAAGCCCTGTTTATCCCGTGGTGTTCTTTGGCGGCCAGGAAGTT
GGCCGCATGAAGATCAAGCTGTTTGCGGATGTTGTGCCTAAGACGGCCGAGAATTTTAGG
CAGTTCTGCAATGGAGAATTCAGAAAAGATGGGGTTCCAATAGGCTATAAAGGGAGCACC
TTCCACAGGGTCATAAAGGATTTCATGATTCAGGGTGGGGATTTTGTTAATGGAGATGGT
ACTGGAGTTGCCAGTATTTACCGGGGGCCATTTGCAGATGAAAATTTTAAATTCAGACAC
TCAGCTCCAGGCCTGCTTTCCATGGCAAACAGTGGTCCCAGTACAAATGGCTGCCAGTTC
TTCATCACCTGCTCTAAATGTGATTGGCTGGATGGGAAACAGGTAGTGTTTGGCAAAATC
ATTGATGGACTTCTAGTGATGCGAAAGATCGAGAATGTTCCCACAGGCCCCAACAATAAG
CCCAAGCTGCCTGTGGTGATCTCACAGTGTGGGGAGATG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAVANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENF
M.VANSSPV.PVVFF....GGQEVGRMKI.LFADVVPKTAENFRQFC.GEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENF
Retrocopy
MEVANSSPVYPVVFF----GGQEVGRMKIKLFADVVPKTAENFRQFCNGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENF


Parental protein
KLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM
K.RHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGK.VVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM
Retrocopy
KFRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKQVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide