RetrogeneDB ID:
retro_mputfur_546
Organism:
Location:
GL896919.1:1868462-1869687 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
69.66 %
Coverage:
62.12 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_546
ATGAACGTAGCAGCCAAGTACCGCCAGGCCTCCCTGTATGTGGGTGATCTCAATGCAGAT
GTCACCGAGGACCTGCTGTTCACAAAGTTCAGCGCCGTGGGGCCTGTGCTGTCCATCCGC
ATCTGCAGGGACCTGGTCACCCGCCGCTCGCTGGGCTATGCCTACGTGAACTTCCTGAAG
CTGGCTGATGCCCAGAAGGCCCTGGACACAATGAACTTTGACATGATAAAAGGCAAACCC
ATCCGTCTCATGTGGTCTCAACGTGATGCCTACTTAAGGAAATCTGGCATTGGGAACGTG
TTCATCAAGAATCTAGACAAATCTATTGATAACAAAACCCTTTATGAACATTTTTCAGCT
TTTGGGAAGATCCTGTCCTCCAAAGTGATGACTGATGATCAAGGCTCTAGGGGTTATGCA
TTTGTGCACTTTCAGAACCAGGTCGCAGCTGACAGGGCCATCGAGGAGATGAATGGGGCC
CTGCTTAAGGACTGCAGGCTGTTTGTTGGCCGATTCAAAAACCGTAAAGATCGGGAAGCT
GAGCTCCAAAACAAGGTCAATGAATTCACCAATGTTTACATCAAAAACTTTGGCGATGAC
ATGGATGATGAGAGACTGAAGGAAGTTTTTGGTAAATACGGCAAAACCCTGAGTGTTAAG
GTGATGACAGATTCCAGTGGGAAATCCAAAGGCTTTGGCTTTGTGAGTTTTGATAGCCAT
GAGGCTGCCAAAAAAGCTGTTGAAGAAATGAATGGAAAGGACATAAACGGACAGCTGCTT
TTTGTAGGCCGGGCGCAAAAGAAATCAGAGCGGCAGGCTGAGTTGAAGCAAATGTTTGAG
CAGCTGAAACAGGAAAGATTTCGGAGAAGCCGGGGCATGAAGCTCTACATTAAGAACCTC
GATGATACCATCGATGATGAAAAACTGTGGAGGGAATTTTCTTCATTTGGATCAATTAGC
AGAGTCAAGATAATGCGGGAAGAAGGGCGAAGCAAAGGGTTTGGGTTGATCTGCTTCTCT
TCTCCTGAGGAGGCCACTAAAGCAATGGCTGAGATGAATGGGCGAATCTTGGGCTCCAAG
CCACTCTACATTGCCCTGGCCCACAGGCCCTAGGAGAGAAAACTTACTGCACCAGCCAGT
GTTTGCAGCAGGCGTTGGAATGATAGTGATCTCTGCCTGAATTATGCTGAGAAAATTCCA
AACCCCAGCTGATGGCCACTTAATT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGN
MN.AA..Y..ASLYVGDL..DVTE..L..KFS..GPVLSIR.CRD..TRRSLGYAYVNF...ADA..ALDTMNFD.IKGKPIR.MWSQRD..LRKSG.GN
Retrocopy
MNVAAK-YRQASLYVGDLNADVTEDLLFTKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALDTMNFDMIKGKPIRLMWSQRDAYLRKSGIGN


Parental protein
VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGE
VFIKNLDKSIDNK.LY..FSAFG.ILS.KV..D..GS.GYAFVHF..Q.AAD.AIE.MNG.LL.D...FVGRFK.RK.REAEL..K..EFTNVYIKNFG.
Retrocopy
VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMTDDQGSRGYAFVHFQNQVAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQNKVNEFTNVYIKNFGD


Parental protein
EVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
..DDE.LKE.F...GKTLSVKVM.D.SGKSKGFGFVS...HE.A.KAVEEMNGK.I.G...FVGRAQKK.ERQAELK..FEQLKQER..R..G..LYIKN
Retrocopy
DMDDERLKEVFGKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKSERQAELKQMFEQLKQERFRRSRGMKLYIKN


Parental protein
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER-KAHLTNQYMQRV-AGMRALPANAIL
LDDTIDDEKL..EFS.FGSI...K.M.E.GRSKGFG..CFSSPEEATKA..EMNGRI.GSKPLY.ALA.R..ER.K...T.Q..Q....GM....A...L
Retrocopy
LDDTIDDEKLWREFSSFGSISRVKIMREEGRSKGFGLICFSSPEEATKAMAEMNGRILGSKPLYIALAHRP*ER/KTYCTSQCLQQA/VGMIVISA*IML


Parental protein
NQFQPAAGGYFV
..FQ..A.G...
Retrocopy
RKFQTPADGHLI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide