RetrogeneDB ID:
retro_mputfur_549
Organism:
Location:
GL896919.1:7832366-7833011 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
80.09 %
Coverage:
64.67 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
Ldhb
Parental gene aliases:
No gene alias available
Parental gene description:
lactate dehydrogenase B [Source:MGI Symbol;Acc:MGI:96763]

Genomic region (view in browser)





>retro_mputfur_549
ATTGTGGCGGTGACTGCGGGAGTCTGCCAGCAGGGGGGAGAGTGCCGGCTCAATCTGGTG
CAGAGGAATGCTAATGTCTACAAATTCATTATTCTGCAGATAGTCAAGTATAGTCTTGAC
AGCATCATAATTGTGGTTTCCAATCCAGTGGATATTCTCACACATGTTACCTGCAAACTA
AGTGGACTACCCAAGAACTGTGTGATTGGAAGTGGGTGTAATCTGGATTCTGCTAGATTT
TGCTATTTTAAGGCTGAAAAACTAGGCATTCATCCCAGCAGCTGCCATGGATGTATTTTG
GGAGAACATGGTGATTCAATTGTGGCTGTGTGGAGTGGAGTGAATATGGTAGATGTTTCT
CTTCAGGAACTGAATCCAGAAATGGGAACAGATGGCAGTGAGAATCGGAAGGAAGTGTAT
AAGGTGGTGATGGAAAGTGCCTAAGAAGTCATCAGGCTAAAAGGATATACCAACTGGGCT
ATTGAATTAAGTGTGGCTGATCTCATTGAATCCATGTTGGAGAATTTATCCGGGATTCAT
CCAGTGTCAACAATGGCGAAGGGGATATATGGCATTCAGAATGAAGTCTTTCTGAGCTTT
CTGTGTAATCTGAACACTTGGGGCTTAACCAGTGTGATTACAGAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWIL
IV.VTAGV.QQ.GE.RLNLVQRN.NV.KFII.QIVKYS.D.IIIVVSNPVDILT.VT.KLSGLPK..VIGSGCNLDSARF.Y..AEKLGIHPSSCHG.IL
Retrocopy
IVAVTAGVCQQGGECRLNLVQRNANVYKFIILQIVKYSLDSIIIVVSNPVDILTHVTCKLSGLPKNCVIGSGCNLDSARFCYFKAEKLGIHPSSCHGCIL


Parental protein
GEHGDSSVAVWSGVNVAGVSLQELNPDMGTDNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIENEVFLS
GEHGDS.VAVWSGVN...VSLQELNP.MGTD..SEN.KEV.K.V.ESA.EVI.LKGYTNWAI.LSVADLIESML.NLS.IHPVSTM.KG.YGI.NEVFLS
Retrocopy
GEHGDSIVAVWSGVNMVDVSLQELNPEMGTDG-SENRKEVYKVVMESA*EVIRLKGYTNWAIELSVADLIESMLENLSGIHPVSTMAKGIYGIQNEVFLS


Parental protein
LPCILNARGLTSVINQ
..C.LN..GLTSVI..
Retrocopy
FLCNLNTWGLTSVITE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide