RetrogeneDB ID:
retro_mputfur_555
Organism:
Location:
GL896919.1:9478817-9479509 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
84.48 %
Coverage:
69.37 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_555
ATGGTGAAAGTTGGGGTGAACGGATTTGGTTGTATTTGGTGCCTGGTCACCAGGACTGCT
TTAATTCTGGCAAAGTGGATATTGTCGTCATCAATGACCCTTTCATTGATCTCAACTATG
TGGCCTACATATTCCAGTATGATTCTATCCATGGCAAATTCTACGGCACAGTCAAGGCTG
AGAACGGGAAGCTTGTCATCAATGGAAAGTCCATCTCCATCTTCCAGGAGCAAGATCCCA
CCAACATCAAATGGTGCGATGCTGGTGCTGAGTATGTTGTGGAGTCCACTGGGGTCTTCA
CCACCCTGGAGAAGCCTGGAGCTCACTTGAAGGGCGGGGCCAAGAGGATCATTGTCTCCG
CTCCTTTTGCTGATGCCCCCATGTTTGTGATGGGTGTGAATGATGAGAAGTATGACAACT
CCCTCAAGATTGTCAACAATGCCTCCTGTATCATCAACTGCTTGGATTCTCTGGTCAAGG
TCATCCATGACAACTTTGGCATCATGGAGGGACTCATGACCACCTACCATGCCATCACTG
CCACCCAGAAGACTATGGACTGCCCCTCTGGGAAGCTGTGGCATGATGGCTGAGGGGCTG
CCCAGAACATCATCCCCGCTTCCACTGGTGTGGCCAAGATTGTAGGCAAAGTCATCCCTG
AGCTGAATGGGAAGTTCACTGGCCTAGCCTTC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVKVGVNGFGRIGRLVTRAA-FNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKAENGKLVINGKSISIFQERDPANIKWGDAGAEYVVESTGV
MVKVGVNGFG.I..LVTR.A.FNSGKVDIV.INDPFIDLNY..Y.FQYDS.HGKF.GTVKAENGKLVINGKSISIFQE.DP.NIKW.DAGAEYVVESTGV
Retrocopy
MVKVGVNGFGCIWCLVTRTA/FNSGKVDIVVINDPFIDLNYVAYIFQYDSIHGKFYGTVKAENGKLVINGKSISIFQEQDPTNIKWCDAGAEYVVESTGV


Parental protein
FTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRG
FTT.EK.GAHLKGGAKR.I.SAP.ADAPMFVMGVN.EKYDNSLKIV.NASC..NCL..L.KVIHDNFGI.EGLMTT.HAITATQKT.D.PSGKLW.DG.G
Retrocopy
FTTLEKPGAHLKGGAKRIIVSAPFADAPMFVMGVNDEKYDNSLKIVNNASCIINCLDSLVKVIHDNFGIMEGLMTTYHAITATQKTMDCPSGKLWHDG*G


Parental protein
AAQNIIPASTGAAKAVGKVIPELNGKLTGMAF
AAQNIIPASTG.AK.VGKVIPELNGK.TG.AF
Retrocopy
AAQNIIPASTGVAKIVGKVIPELNGKFTGLAF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide