RetrogeneDB ID:
retro_mputfur_559
Organism:
Location:
GL896920.1:605496-606037 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.32 %
Coverage:
94.82 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_559
AGAAGGTCCAGGTACAGCTCTGTTTTGTCCTCCAGAATTCAGGTTCATCCAATTCCATTT
AACTCCACCATGTTGCTTAAATTCCACCCTAAAAGGACCAGAGTGCTATACCTGAGGTGC
ATGGGGTTGGGAAGTCAATGCACATCTGCCTTGGCCCTGAGGATCAGCCCCCTGAGACTG
TCTTCAAAAAAAGTTTGTGATGACATCACCCAGGGAACCGGTAATGGGAAGGGGCTGAGG
ATTGCAGTGAAACTGACCATTCAGAACAGACAGGCCCAGATTTAAGTGGTACCTTCTGCT
TCTGGCCCGATTATTAACGCTCTCAAGGAATTGCCAAGAGAAAAAGAGAAGCAGAGAAAC
ATTAAGCACAATGGAAATATTACTTTTGATGAAATTGTCACATTGCCCAATAGATGCAGC
ACTTGTCTTTAGCCAGAGGGCTCTCTGGAACCATTAAAGAGATGGAGGGACTGCCTGGTC
TGAGGACTGCAATGTTGATGGCCGCCACCATGACGACATCATAGATGATATCAAGAATGG
T


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RRQRCNSLRSSRIRVHPTPATSAMPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSA
RR.R..S..SSRI.VHP.P..S.M..KF.P....V.YLRC.G.....TSALA..I.PL.LS.KKV.DDI...TG..KGLRI.VKLTIQNRQAQI.VVPSA
Retrocopy
RRSRYSSVLSSRIQVHPIPFNSTMLLKFHPKRTRVLYLRCMGLGSQCTSALALRISPLRLSSKKVCDDITQGTGNGKGLRIAVKLTIQNRQAQI*VVPSA


Parental protein
SALIIKALKEPPRDRKKQKNSAVKHSGNITFDEIV-NIARQMRHRSLARELSGTIKEIL-GTAQSVGCNVDGRHPHDIIDDINSG
S..II.ALKE.PR...KQ.N...KH.GNITFDEIV..IA..M.H.SLAR.LSGTIKE...GTA.S..CNVDGRH..DIIDDI..G
Retrocopy
SGPIINALKELPREKEKQRN--IKHNGNITFDEIV/HIAQ*MQHLSLARGLSGTIKEME/GTAWSEDCNVDGRHHDDIIDDIKNG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide