RetrogeneDB ID:
retro_mputfur_56
Organism:
Location:
GL897003.1:2798823-2800479 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
91.39 %
Coverage:
68.95 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
EWSR1
Parental gene aliases:
No gene alias available
Parental gene description:
EWS RNA-binding protein 1 [Source:HGNC Symbol;Acc:3508]

Genomic region (view in browser)





>retro_mputfur_56
ATGCCAGTCCACATTCAACATTCAAAATTCATTAAAGTGGGAACGAGAAGGAAGGAGAGA
AAATGGCGTCCACAAATTACAGTACATACAGCCAAGCTGCAGCCCAGCAGGGCTACAGTG
CATACACCGCCTAACCCACTCAAGGATATGCACAGACCACCCAGGCATATGGGCAGCAAA
GTTATGGAACCTATGGACAGCCCACTCATGTCAGCTATACCCAAGCTCAGACCACTGCTA
CGTATGGGCAGACCACCTATGCAACTTCTTATGGACAGCCTCCTGCTGGTTATACTACTC
CAACCCCAGGCATACAGCCAGCCTGTCCAGGGTTATGGCACTGGTGCTTACGATACCACC
ACTGCTACAGTCACTACCACCCAGGCCTTCTATGCAGCTCAGTCTGCATATGGCATTCAA
CCTGCTTACCCAGCCTATGGGCAGCAGCCGGCAGCCACCGCACCTGCAAGACTGCAGGAT
GGTAACAAACCCACTGAGACTAGTCAACCTCAATATAGCACAGGGGGTTACAACCAGTCC
AGCCTAGGATATGGACAGAGTAACTACAGTTATCCCCAGGTACCTGGGAGCTACCCCATG
CAGCCAGTCATGGCACCACCATCTTATCCTCCTACCAGCTACTCCTCTACACAGCTGACT
AGTTATGATCAGAGCAGTTACTCGCAGCAGAACACCTATGGCAAGCCGAGCAGCTATGGA
CAGCAGAGCAGCTATGGTCAACAAAGCAGCTGTGGGCAGCAGCCGCCCACTAGTTATCCC
CCCCAAACTGGATCCTATAGCCAGGCTCCAAGTCAATATAGCCAACAGAGCAGCAGCTAC
GGGCAGCAGAGTTCATTCCCACAGGACCACCCCAGTAGCATGGGTGTTAATGGGCAGGAG
TCTGGAGGATTTTCCGGACCAGGAGAAAACTGGAGCATGAGTGGCCCTGATAACCGGGGC
AGGGGAAGAGGGGGATTTGATCGTGGAGGCATGAGCAGAGTTGGGCAAGGAGGAGGACAC
AGTGGAATGGGTGCTGGAGAGCAAGGTAGCTTCAATAAGCCTGGTGGACCCATGGATGAA
GGAACAGATCTTGATCTAGGCCCACCTGTAGATCCAGATGAAGAGTCGGACAACAGTGCA
ATTTATGTGCAAGGCTTAAATGGCAATGTGACTTTAGATGATCTGGCTGACTTTTTTAAG
CAGTGTGGAGTTGTTAAGATGAATAAGAGAACCGGACAACCCATGATTCATATCTACTTG
GACGAGGAAACAGGAAAGCCCAAAGGTGACGCTACCGTTTCCTATGAAGACCCGCGAACT
GCCAAGACTGCTGTGGAGTGGTTTGATGGGAAAGATTTTCAAGGGAGCAAACTTAAGGTA
TCTCTTGTTTGGAAGAAGCCTCCAATGAGGAGGGGTGGCATGCCGCCTCGTGAGGGCAGA
GGGATGCCGCCGCCCCTACGTGCAGTTCCAGGAGGCCCAGGAGGTCCTGGAGGCCCCATG
GGTCCCTTGGGAGGCCGTGGAGGAGACAGAGGTGTCTTTCCCCCAAGAGAGCCCCGGGGT
TCCCTAGGGAACCCATCCGGAGGAGGAAATGTCCAGCACGGAGCTGGAGACTGGCAGTGC
TCCAATCCGGGTTGTGGAAACCAGAACTTTGCCTAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PQAYSQPVQGYGTGAYDTTTATVTTTQASYAAQSAYGTQPAYPAYGQQPAATAPARPQDGNKPAETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGSYPMQ
PQAYSQPVQGYGTGAYDTTTATVTTTQA.YAAQSAYG.QPAYPAYGQQPAATAPAR.QDGNKP.ETSQPQ.STGGYNQ.SLGYGQSNYSYPQVPGSYPMQ
Retrocopy
PQAYSQPVQGYGTGAYDTTTATVTTTQAFYAAQSAYGIQPAYPAYGQQPAATAPARLQDGNKPTETSQPQYSTGGYNQSSLGYGQSNYSYPQVPGSYPMQ


Parental protein
PVTAPPSYPPTSYSSTQPTSYDQSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQES
PV.APPSYPPTSYSSTQ.TSYDQSSYSQQNTYG.PSSYGQQSSYGQQSS.GQQPPTSYPPQTGSYSQAPSQYSQQSSSYGQQSSF.QDHPSSMGV.GQES
Retrocopy
PVMAPPSYPPTSYSSTQLTSYDQSSYSQQNTYGKPSSYGQQSSYGQQSSCGQQPPTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFPQDHPSSMGVNGQES


Parental protein
GGFSGPGENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGSAGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSDNSAIYVQGLNDNVTLDDLADFFK
GGFSGPGEN.SMSGPDNRGRGRGGFDRGGMSR.G.GGG..GMG.AGE.G.FNKPGGPMDEG.DLDLGPPVDPDE.SDNSAIYVQGLN.NVTLDDLADFFK
Retrocopy
GGFSGPGENWSMSGPDNRGRGRGGFDRGGMSRVGQGGGHSGMG-AGEQGSFNKPGGPMDEGTDLDLGPPVDPDEESDNSAIYVQGLNGNVTLDDLADFFK


Parental protein
QCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSLRGGMPPREGRGMPPPLRAGPGGPGGPGG
QCGVVKMNKRTGQPMIHIYLD.ETGKPKGDATVSYEDP.TAK.AVEWFDGKDFQGSKLKVSL..KKPPM...RGGMPPREGRGMPPPLRA.PGGPGGPGG
Retrocopy
QCGVVKMNKRTGQPMIHIYLDEETGKPKGDATVSYEDPRTAKTAVEWFDGKDFQGSKLKVSLVWKKPPMR--RGGMPPREGRGMPPPLRAVPGGPGGPGG


Parental protein
PMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFA
PMG..GGRGGDRG.FPPR.PRGS.GNPSGGGNVQH.AGDWQC.NPGCGNQNFA
Retrocopy
PMGPLGGRGGDRGVFPPREPRGSLGNPSGGGNVQHGAGDWQCSNPGCGNQNFA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide