RetrogeneDB ID:
retro_mputfur_561
Organism:
Location:
GL896920.1:578231-578681 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
87.33 %
Coverage:
87.72 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
C1orf194
Parental gene aliases:
No gene alias available
Parental gene description:
chromosome 1 open reading frame 194 [Source:HGNC Symbol;Acc:32331]

Genomic region (view in browser)





>retro_mputfur_561
AGACTTACAGTTTCCAAGAAACTGCCATGTGAGAACCCAGCTCACCTTGCTCAGCAACAG
GAACCCTGTAGTTGGCTCAGCTCAACTCCCACAATCACCTCCATGAGGCGGGATGTTTAT
TTTTTTGATCCTAAGATATTAAAAGATGACCTTAATTTCCACTTAGCAGCCTTGTACAAC
CACCACACAGGGACATTCAAGAACAAAAGTGAGATAGTCTTACACCAGGAGACTACCCAG
GATACCCATGGAATCATCAAGACCCAATTCCCTGGAGAACTTTTACCCCCTCCTCTACCA
CCTTCCATCACTTCCCAGTCTAACATCAGATACTGGATCAACCCTAAGAAGGAGTCTATT
CACAGCATTCAGGGATCCATAGTATCCGCTCACACTGCAGCCACCAGTGGAGGCTACTCC
CAAAAGAATGATGATGGCTTCTTCTCAACC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KLRASKKLPYKNPAHLAQQQEPWSRLSSTPTITSMRRDVYFFDPEIPKDDLDFRLAALYNHHTGTFKNKSEILLHQETTQDTHGIIKTQFPGELLPPPPP
.L..SKKLP..NPAHLAQQQEP.S.LSSTPTITSMRRDVYFFDP.I.KDDL.F.LAALYNHHTGTFKNKSEI.LHQETTQDTHGIIKTQFPGELLPPP.P
Retrocopy
RLTVSKKLPCENPAHLAQQQEPCSWLSSTPTITSMRRDVYFFDPKILKDDLNFHLAALYNHHTGTFKNKSEIVLHQETTQDTHGIIKTQFPGELLPPPLP


Parental protein
PSITSRSNIRYWINPKKESIHSIQGSIVSPHTAATNGGYSRKTDGGFFST
PSITS.SNIRYWINPKKESIHSIQGSIVS.HTAAT.GGYS.K.D.GFFST
Retrocopy
PSITSQSNIRYWINPKKESIHSIQGSIVSAHTAATSGGYSQKNDDGFFST


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide