RetrogeneDB ID:
retro_mputfur_562
Organism:
Location:
GL896920.1:4946342-4946693 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
79.83 %
Coverage:
97.54 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
Gm2178
Parental gene aliases:
No gene alias available
Parental gene description:
predicted gene 2178 [Source:MGI Symbol;Acc:MGI:3780348]

Genomic region (view in browser)





>retro_mputfur_562
GCATTCAGAATGGTCCAGCATTTGACCTACTCTCGTAAGCTGTCCCACAATACAGCCTCT
AACAAAACTAGACTGCCCTGAACCCATGGCAACAGGATCATTTGCCTTTGTACCAAGAAG
GTTGGGAAAGCACCAAAATCTGTGTGTGATGTGTGCCCAGGCCGACTTCGAGGAGTTTGT
GTGGTGAGATAGAAAGTGCTTATGAGGTTGTCTAAAACAAAGAAACACGTCAGCAGGGCC
TACGGTGGTTCCATGTGTGCCAAGTGTGTTTGTGACAAGCGCGCTTTCCTTACCAAGGAA
CAGAAAATCGCTGTGAAAGCCATGAAGGTACAAGCACAGAGTCAGAAAGCT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
AFRMVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLI
AFRMVQ.LTY.R.LS.NTASNKTRL..T.GNRI..L.TKKVGKAPKS.C.VCPGRLRGV..VR.KVLMRLSKTKKHVSRAYGGSMCAKCV.D..KRAFL.
Retrocopy
AFRMVQHLTYSRKLSHNTASNKTRLP*THGNRIICLCTKKVGKAPKSVCDVCPGRLRGVCVVR*KVLMRLSKTKKHVSRAYGGSMCAKCVCD--KRAFLT


Parental protein
EEQKIVVKVLKAQAQSQKA
.EQKI.VK..K.QAQSQKA
Retrocopy
KEQKIAVKAMKVQAQSQKA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide