RetrogeneDB ID:
retro_mputfur_565
Organism:
Location:
GL896920.1:12512382-12512883 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
72.67 %
Coverage:
96.57 %
Frameshifts:
3
Stop codons:
0


Parental gene:
Parental gene symbol:
TPT1
Parental gene aliases:
No gene alias available
Parental gene description:
tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:12022]

Genomic region (view in browser)





>retro_mputfur_565
ATGATCAGCTACCAGGACTTCTTCAGCCATGATAAGATGTTCTCCAATGTCTACAAGATT
TGGGAGATCAGAGATGAGTTGTGCCTGGAAGTAGAGGGGAAGATGATCAGGAGGACAGAG
GGTAACACTGATGATTTACTGATGATGGAAATACTTCCACTGAAGTCCCGGAGGGCAAAG
GTACTGGAAGCACAGTAATCACTAATGTTGCTATTGTCATGAACCATACTTGCAGGAAAC
CAGCTTCACAAAGGGCGCCTACAAGAAGTACATCAAAGATTACATGAAATCAAAGGCAAA
CTTAAAGAACAGAGGCCAGAAAGAGTAAAATCTTTTATGACAGGAACTGAGGAACAAATC
AGGCACATTCTAGCTACTTTCAAAAATTACCAGTTCTTTACTGGGGAAGACATAAATCCA
GATGGCATGGTTGTTCTGCTGGACTCCTGTGTGAATGGTGTGACTCCATGTATGATTTTC
TCTAAGGATGGTTTAGAAATG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLI-GGNASAEGPEGEGTESTVITGVDIVMNH-HLQETSFTKEAYKKYIKDYMKS
MI.Y.D..SHD.MFS..YKI.EI.D.LCLEVEGKM..RTEGN.DD.L...GN.S.E.PEG.GT.STVIT.V.IVMNH..LQETSFTK.AYKKYIKDYMKS
Retrocopy
MISYQDFFSHDKMFSNVYKIWEIRDELCLEVEGKMIRRTEGNTDDLLM/DGNTSTEVPEGKGTGSTVITNVAIVMNH/YLQETSFTKGAYKKYIKDYMKS


Parental protein
IKGKL-EEQRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEM
.K..L..EQRPERVK.FMTG..EQI.HILA.FKNYQFF.GE..NPDGMV.LLD....GVTP.MIF.KDGLEM
Retrocopy
-KANL/KEQRPERVKSFMTGTEEQIRHILATFKNYQFFTGEDINPDGMVVLLDSCVNGVTPCMIFSKDGLEM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide