RetrogeneDB ID:
retro_mputfur_567
Organism:
Location:
GL896921.1:5679076-5679851 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
61.36 %
Coverage:
60.7 %
Frameshifts:
3
Stop codons:
5


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_567
AGACACACTGGCACGCAGCTGCAAGGTTATCAATACTATGACCCCAAGACTTGTAGCTTT
AACTTCACAGGCACTAGGGAGGATATTTCAAAAACACCAGAGCAAAGAGTTCTTCTGCAC
ACTCCTGCCCACAATCCCATGGGAGTGGACCCTCATCCTGAGCAATAGAAGGCAACAGCA
ATAGCAGTGAAAGAAGAATCTCTCTAGTTCTTTGACATGGCCTACCAAGGTTTTGTCAGT
AGTGATGATAACAAGGGAGCCTGGGTTGTGCACCACTTCGCTGAAGAGGGCATTAATGTT
TGTCTCTGCTAATCCCATACCAAGAACATGGGCTTCTATGGTAAGCATGTGGGAGACTTC
ACTGGGCTCTGCAAAGATGTTGAGGTCAGAGGGGTGGAGTCACAAATGAAGACCTTGATG
TTCCTCTGTAAATTTCAGCCCTCCTCTCAATAGAGCTCAGGTTGCCTTGACCATTCTGAC
CAGCCCAGATTTTCCAAAACAATAGTTGCAGGAAGTGCAAGTCATGGCCAACTGCATCAT
TAGTTTGCAGATTCAGCTGGTCTCGAACCTCAAGAGGGAGGGCTTCTCCCAACCATGCAC
AGCACATCCCCGACCAGATTAGCCTGTTTTGTTTCAGAGGGCTAAAGCCTGAACAGGTGG
AGCAGCTGACCAAGGAGTTCTCCATCTAAACAACAGAGGTCAGCTGCATCCCTGTGGCAA
GGGTCATCTTGGACAACTGGGCTACCTTGTTCATCACATTCACCGGGTCACCAAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RDAGMQLHGYRYYDPKTCGFDFTGALEDISKMPQQSVLLLHACAHNPTGVDPRPEQWKEIATVVKKNNLFAFFDMAYQGFASGDGNKDAWAVRYFIEQGI
R..G.QL.GY.YYDPKTC.F.FTG..EDISK.P.Q.VLL.H..AHNP.GVDP.PEQ.K..A..VK...L..FFDMAYQGF.S.D.NK.AW.V..F.E.GI
Retrocopy
RHTGTQLQGYQYYDPKTCSFNFTGTREDISKTPEQRVLL-HTPAHNPMGVDPHPEQ*KATAIAVKEESL*-FFDMAYQGFVSSDDNKGAWVVHHFAEEGI


Parental protein
NVCLCQSYAKNMGLYGERVGAFTVVCKDADEAKRVESQLKILI-RPMYSNPPINGARIASTILTSPDLRKQWLQEVKGMADRIISMRTQLVSNLKKEG-S
NVCLC.S..KNMG.YG..VG.FT..CKD..E...VESQ.K.L........PP.N.A..A.TILTSPD..KQ.LQEV..MA..IIS...QLVSNLK.EG.S
Retrocopy
NVCLC*SHTKNMGFYGKHVGDFTGLCKDV-EVRGVESQMKTLM\SSVNFSPPLNRAQVALTILTSPDFPKQ*LQEVQVMANCIISLQIQLVSNLKREG\S


Parental protein
SHNWQHITDQIGMFCFTGLKPEQVERLTKEFSIYMTKDGRISVAGVT-SGNVGYLAHAIHQVTK
....QHI.DQI..FCF.GLKPEQVE.LTKEFSI..T....I.VA.V...G..GYL.H.IH.VTK
Retrocopy
PNHAQHIPDQISLFCFRGLKPEQVEQLTKEFSI*TTEVSCIPVARVI/LGQLGYLVHHIHRVTK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide