RetrogeneDB ID:
retro_mputfur_570
Organism:
Location:
GL896921.1:12496156-12497194 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
75.85 %
Coverage:
82.42 %
Frameshifts:
5
Stop codons:
6


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_570
GGCAGAGCTGTGGCTTGAATTCCCAGAGCTCAAGGCAGTGGGATACACTGTTCTGGCCAG
GGTACTTTTGGAAATACCTGTCATGGTGGGCACATGTTTGCACCAACCCAAACCTGGCAC
TGTTGGCCTCGCAGAGTGAACACAAAATAGAAGCGATATGCCATCTGCTCTGCCCTGGCT
GCCTCAGCCTTACTAGTGCTGATCATGTCTAAAGGTCATCATATTGAGGAAGTTCAGAAT
ATTCTTTGGTGACTGAAGGTAAAGTTGAAGACTACAAGAAGTCCAAAGAGGCTGTTCTGC
TTCTTAAGAAACTTAAAGCCTGGGATGATATCAAAAAGGTCTATGCCTCTCAGCAAATGA
GTGCTGGCAAGGGCATAATGAGAAACTGTTGTCGTATCCAGTGCAGGTGATCCTCCATCA
TCTACTGTGAAGATAGCAGTATCATCAAGGCCTTCAGAAACATCCCTGGAATTCCTTGAC
TTAATTTAAGCAAACTGAACATTTTGAAACTTGCTCCTGGTGGGCATGTCGGATGTTTCT
GCATTTGGACTGAAAGTGCTTTCCGCAAGTTAGATGATCTGTATGGCACTTGGCATAAGG
CTGCATCCTTCAAGAGTCTCTACAACCTTCCCATGCATAAAGTGCTTGATACAAACCTTA
GCAGAATCTTGGAAAAGTCCAGAGATCTAAAGAGCCCTCTGAGCACCATGTAAGAAGAGT
CATCGCAGGGTCCTGAAGAAGAATCCATTGAAGAACCTGAGAATCATGTCGAAGGTAAAC
CTGTATCAAAGACCTTGTGCCAGAATACCATTCTTCGCCAGGCCAAGAATCACAAACTGT
GGTTGGATAAGGCAGCAGAAGCCATAGAGGCCAAATCAGATGAGAAGGGGGTTCAAGGCA
AGAAGCCTGTAGTAGGGATGAAAGGAAAGAGGCTGTTGGTGCGAAGAAGCAGAAGAAACC
TGTGGTGGGGGAGAAGGCTGCAGCCAACAGAAACGAGCAGCTGACAAGAAGCCTGCAAAA
AAGAAACACAGTGAAGAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVP-ELPLVVEDKVEGYKKTKEAV
GRAVA.IPR..G.G.H.SGQG.FGN.C.GG.MFAPT.TW..W.RRVNT..KRYAICSALAASAL..L.MSKGH.IEEV..E..LV.E.KVE.YKK.KEAV
Retrocopy
GRAVA*IPRAQGSGIHCSGQGTFGNTCHGGHMFAPTQTWHCWPRRVNTK*KRYAICSALAASALLVLIMSKGHHIEEVQ/EYSLVTEGKVEDYKKSKEAV


Parental protein
LLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDDLYGTWR
LLLKKLKAW.DIKKVYASQ.M.AGKG.MRN..RIQ.R...IIY.ED..IIKAFRNIPGI..LN.SKLNILKLAPGGHVG.FCIWTESAFRKLDDLYGTW.
Retrocopy
LLLKKLKAWDDIKKVYASQQMSAGKGIMRNCCRIQCR*SSIIYCEDSSIIKAFRNIPGIP*LNLSKLNILKLAPGGHVGCFCIWTESAFRKLDDLYGTWH


Parental protein
KAASLKSNYNLPMHKMLNTDLSRIL-KSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLN-PYAKTMRRNTILRQAKNHKLRMDKAAAALEAKSGEKG
KAAS.KS.YNLPMHK.L.T.LSRIL.KSPEI.RAL.AP.KK.HRRVLKKNPLKNLRIM.K.N.P..KT...NTILRQAKNHKL..DKAA.A.EAKS.EKG
Retrocopy
KAASFKSLYNLPMHKVLDTNLSRIL\KSPEI*RAL*APCKKSHRRVLKKNPLKNLRIMSKVN/PVSKTLCQNTILRQAKNHKLWLDKAAEAIEAKSDEKG


Parental protein
VPGKKPLVGKKGKK-AVSVKKQKKPVVGKKAAATK-KPAADKKPAEKKPTAE
V.GKKP.VG.KGK..AV..KKQKKPVVG.KAAA...K.AADKKPA.KK...E
Retrocopy
VQGKKPVVGMKGKR/AVGAKKQKKPVVGEKAAANR/KRAADKKPAKKKHSEE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide