RetrogeneDB ID:
retro_mputfur_573
Organism:
Location:
GL896921.1:15492159-15492940 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
84.47 %
Coverage:
99.62 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
Nsa2
Parental gene aliases:
No gene alias available
Parental gene description:
NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1913883]

Genomic region (view in browser)





>retro_mputfur_573
CCACAAAATGAATATATTGAGTTACACTGGAAGCGCTGTGGCTATTCTTTGGATTACCAT
GAGAAAAAGAGAAAGAAAGAAGGTCGAGAGGCTCATGAACAGTCAAAGAAGGCAAAAAAG
ATGATTGGTATGAAAGCTAAGCTCTACCATAAACAGCACCATGCTGAGAAAATACAAAGG
AAAAAGACTATCAAGATGCATGAAAAGAGAAACACCAAACAAAAGAATGATGGAAAGACT
CCACAAGGAGCAGTACCTGTGTACCTACTGGACAGGGAGGGACAGTCTCAAGCTAAAGTA
CTTTCCAATATGATTAAGCAAAAAGGAAAAGAGAAAACCGGAAAACTGGGAAGTTCCTTT
ACTCAAAGTTCGTGCCCAGGGAGAAACAGAAGTATTAAGAATAGGAAAGAGAAAGAAGAA
AGCATGGAAGAGAATGGTCACTAAAGTCTGCTTTGTTGGAGATGGCTTTACTCAAAAACC
ACCTAAATATGAAAGATTCATTAGGCCAATGGACTTATGTTTCAAAAAGGCCCATGTAAC
ATATCCTGAATTGAAAGCCACCTTTTGCCTGCCAACACTTAGTGTTAAAAAAAAAAAAAA
AAAAATCCTTCACCCCTTAATATATACAACTTTGGGTGTTATTACCAAAGGTACTGTAAT
TGAGGTGATTGTGAGCTAGTTGGGTCTTGTGACACAAGGAGGTAAAGTTATTTGGGGAAA
ATAGGCCCAGGTTACCAACAATCCTGAAAATGATGGATGCTTAAATGCAGTCCTGCTGGT
T


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKV
PQNEYIELH.KR.GY.LDYHEKKRKKEGREAHE.SKKAKKMIG.KAKLYHKQ.HAEKIQ.KKTIKMHEKRNTKQKND.KTPQGAVP.YLLDREGQS.AKV
Retrocopy
PQNEYIELHWKRCGYSLDYHEKKRKKEGREAHEQSKKAKKMIGMKAKLYHKQHHAEKIQRKKTIKMHEKRNTKQKNDGKTPQGAVPVYLLDREGQSQAKV


Parental protein
LSNMIKQKRKEKAGK-WEVPLPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVK
LSNMIKQK.KEK.GK.WEVPL.KVRAQGETEVL.....GKRKKKAWKRMVTKVCFVGDGFT.KPPKYERFIRPM.L.FKKAHVT.PELKATFCLP.L.V.
Retrocopy
LSNMIKQKGKEKTGK\WEVPLLKVRAQGETEVLRI---GKRKKKAWKRMVTKVCFVGDGFTQKPPKYERFIRPMDLCFKKAHVTYPELKATFCLPTLSVX


Parental protein
KNPSSPLY----TTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV
......L.....TTLGVITKGTVIEV.VS.LGLVTQGGKVIWGK.AQVTNNPENDGC.NAVLLV
Retrocopy
XXXXXXLHPLIYTTLGVITKGTVIEVIVS*LGLVTQGGKVIWGK*AQVTNNPENDGCLNAVLLV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide